Spec000710.1
Basic Information
- Insect
- Schizotus pectinicornis
- Gene Symbol
- -
- Assembly
- GCA_951805265.1
- Location
- OX638202.1:5564051-5565598[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 7.7e-12 5.3e-09 35.8 0.2 1 37 15 51 15 57 0.93 2 2 5.3 3.6e+03 -2.1 0.0 12 22 134 145 128 145 0.57
Sequence Information
- Coding Sequence
- ATGGGGAAGAAATACGTGAGAACAACAACTAGAGCTAAATGGAGCGAGGAGGCATTAGAAGAGGCGATGGAGAAGATAGCTACCGGTCAAATGGGCACAAATGAAGCTAGCAGAGTGTATGGAATTGCTTCGCGTACCATCAGAAGGCATTTAGCAAAAGAAAATGCAAAGATACACCTTGGTCGCTGTCCAGAATTGGGGTTTGAACACGAAAAACGGCTTGTTAAACACGTAAAAGCTCTTGAAAAAGTGGGTTTCGCTCCAGATGCAACTGGATTGAAGAAAATGGCATTTGAATTTGcagaaaaacttcaaattgcTCACAGATTTTCAAGAGAACACCGATCTGCTGGCAACGATTGGTTCCGGGCATTCCTACGTCGCAATAAGGAGCTTTCAATACGCAAGTCAGAAGGTTTGTCTGTGGCCAGAGCCAAGGGTATGAACAGAACTgacgtagaaaattattttcaattgttgttggaaattttgtctGAGAATGATTTGCTTGATAAGCctggaaaaatatttaacgtaGACGAAACAGGAATTCAAGTGAATAATAAACCGGGCAGGGTAGTGGCCACAAAAGGTGCCAAAGATGTTTATTCAATAACCAGCACCGAAAGAGGTGAAAACATTTCTTTGATAGGCTGTTGCAATGCAGAAGGCTATTTCATGCCTCCTGTTTTGATATTCAAGgggaaaaataagaaagaagaGTTCTCTGATGGACTTCCCCCTGGCTCAGACGTATTTATGAACCCCAAGTCTTCTTACATCAACAGTGAACTGTTCCTGAGGTGGttcaaaaatcattttttgccAAAGAAAGGTCAAGGAAAAGCTTTTCTGGTTCTGGACGGACATGCATCCCATTGTAATACAATTGAGTTGTTAGATCTGGCTTCAGAAAACGATGTGGTGTTGTTATGTTTACCCAGCCATACCACCCAGGCACTGCAACCACTTGATAGATCGTTCTTTGGTCCCTTAAAAACCTACTTTTTTCAAGAAGCCAAGAACTGGATGGTACAACACAAAAATAGGAAACTCTCCAGAACAGTAATTTCCACATTGATTGGGAATGCATGGATTAGAGGAGCAACTGTAGCTAATGCAGTTTCTGGCTTCCGGGCTTGTGGAATTTTTCCCTACAATCCGCAAGCTGTTCCTGATCATTTCTTCGCAATTTCTGATGCAGCAACAGCAGCGGCAAATGAAACACATCCACAAACCGAAATAAACTCACCCATAGCATCCACTTCTGAAAACCGGAATGTCCAAGGGACCTTATCAAGTAATGAGGAAGAAGAAACtccttcaaaatttcttctagAAAGTAATCCTGTTCCTCATATTCCCATGGACGCTCCAAAACGGAAACAGTTTGCGTTGGAGTTGACGTCTCCAATCAATCGCGTAAAGAGGCGTCTTCTCCAAGAGAAGAAAGATGAGCGCCAATTGAAAACTAGTTCTAAAATTTCCGGTGAAGCTACGACATCTGCTCTTGGTCAAAaacccaaaacaaaaattaaagttaaatga
- Protein Sequence
- MGKKYVRTTTRAKWSEEALEEAMEKIATGQMGTNEASRVYGIASRTIRRHLAKENAKIHLGRCPELGFEHEKRLVKHVKALEKVGFAPDATGLKKMAFEFAEKLQIAHRFSREHRSAGNDWFRAFLRRNKELSIRKSEGLSVARAKGMNRTDVENYFQLLLEILSENDLLDKPGKIFNVDETGIQVNNKPGRVVATKGAKDVYSITSTERGENISLIGCCNAEGYFMPPVLIFKGKNKKEEFSDGLPPGSDVFMNPKSSYINSELFLRWFKNHFLPKKGQGKAFLVLDGHASHCNTIELLDLASENDVVLLCLPSHTTQALQPLDRSFFGPLKTYFFQEAKNWMVQHKNRKLSRTVISTLIGNAWIRGATVANAVSGFRACGIFPYNPQAVPDHFFAISDAATAAANETHPQTEINSPIASTSENRNVQGTLSSNEEEETPSKFLLESNPVPHIPMDAPKRKQFALELTSPINRVKRRLLQEKKDERQLKTSSKISGEATTSALGQKPKTKIKVK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01329715;
- 90% Identity
- iTF_01329714; iTF_01329715; iTF_01329722; iTF_01329716;
- 80% Identity
- -