Sgrm017059.1
Basic Information
- Insect
- Schizaphis graminum
- Gene Symbol
- lrrfip2
- Assembly
- GCA_003264975.1
- Location
- QEWZ01005338.1:845-2575[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 8.6e-21 1.1e-16 61.5 3.6 222 300 6 76 4 76 0.85 2 2 0.023 3e+02 1.0 0.4 122 159 76 113 74 122 0.51
Sequence Information
- Coding Sequence
- tttgGGATTTATTCAGATGTACGACTCAAAAAATTTACCGAAGAACGTAACAGCTATATAGACGAAATTAACAGGCTCAAATTAGAGTTACAAGAAGCCAAACGTCATAGTGATAACCATTATAATGGTACAGACTCAGACGATTTGGAAGATGCCCAAAaagaAACTAATAAAGTTCTTGGtgattataaattcaaatggcAAAAGGCTGAACAAGATATTTCTACATTACAAGCTAATgtagCTAGACTTGAGAGTCaagttattaggtataaaacaGCTTCTGAAGCTTCTGAAAAAGCTGAAGATGAACTGAAATTGGAAAAAACGAAAACTACAGCGcgagcttCGAGAAGCTCAAGCAAAGGTTGA
- Protein Sequence
- FGIYSDVRLKKFTEERNSYIDEINRLKLELQEAKRHSDNHYNGTDSDDLEDAQKETNKVLGDYKFKWQKAEQDISTLQANVARLESQVIRYKTASEASEKAEDELKLEKTKTTARASRSSSKG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -