Basic Information

Insect: Schizaphis graminum
Gene Symbol: UBTFL1
Assembly: GCA_003264975.1
Location: QEWZ01001400.1:535091-540424[-]

Transcription Factor Domain

TF Family: HMG
Domain: HMG_box domain
PFAM: PF00505
TF Group: Other Alpha-Helix Group
Description: High mobility group (HMG) box domains are involved in binding DNA, and may be involved in protein-protein interactions as well. The structure of the HMG-box domain consists of three helices in an irregular array. HMG-box domains are found in one or more copies in HMG-box proteins, which form a large, diverse family involved in the regulation of DNA-dependent processes such as transcription, replication, and strand repair, all of which require the bending and unwinding of chromatin. Many of these proteins are regulators of gene expression. HMG-box proteins are found in a variety of eukaryotic organisms, and can be broadly divided into two groups, based on sequence-dependent and sequence-independent DNA recognition; the former usually contain one HMG-box motif, while the latter can contain multiple HMG-box motifs. HMG-box domains can be found in single or multiple copies in the following protein classes: HMG1 and HMG2 non-histone components of chromatin; SRY (sex determining region Y protein) involved in differential gonadogenesis; the SOX family of transcription factors [1]; sequence-specific LEF1 (lymphoid enhancer binding factor 1) and TCF-1 (T-cell factor 1) involved in regulation of organogenesis and thymocyte differentiation [2]; structure-specific recognition protein SSRP involved in transcription and replication; MTF1 mitochondrial transcription factor; nucleolar transcription factors UBF 1/2 (upstream binding factor) involved in transcription by RNA polymerase I; Abf2 yeast ARS-binding factor [3]; yeast transcription factors lxr1, Rox1, Nhp6b and Spp41; mating type proteins (MAT) involved in the sexual reproduction of fungi [4]; and the YABBY plant-specific transcription factors.
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 5 1.6 1.5e+03 0.2 0.0 18 56 51 92 47 95 0.81

2 5 2.6e-17 2.4e-14 54.0 1.5 3 66 153 216 151 219 0.95

3 5 1.3e-05 0.012 16.5 2.5 4 65 230 289 228 291 0.78

4 5 8.9e-08 8.3e-05 23.5 1.9 2 68 324 388 322 389 0.92

5 5 0.018 17 6.4 1.8 37 66 480 509 477 511 0.91

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	5	1.6	1.5e+03	0.2	0.0	18	56	51	92	47	95	0.81
2	5	2.6e-17	2.4e-14	54.0	1.5	3	66	153	216	151	219	0.95
3	5	1.3e-05	0.012	16.5	2.5	4	65	230	289	228	291	0.78
4	5	8.9e-08	8.3e-05	23.5	1.9	2	68	324	388	322	389	0.92
5	5	0.018	17	6.4	1.8	37	66	480	509	477	511	0.91

Sequence Information

Coding Sequence: ATGGGCTTAGATCGTAAAAGAAAGTCAATTAATGCTCTTCAGAGCActgataaaaaaagaaaaagcataacagaaaaaaaacctGCTTCTTCTTCTTCATCTTCTGAAGATTCTGATGAGCAATCTGATCATGATAATGGATTAAATAATgaagtaaaaattgaaaatcctaCCATCAGCCGTTGGCCTCAAGATGATATCCAAAAGCTGTTATCTAAAATGGAGTTGGCACTTCCTAAGAATGACAATCAAACATTTAGAAGTCGATTTACAAAACTAGACTGGGATAAAATTCAATTTGATAGTTATAGTAAAGATGAATGTCAATCCACTTGGTTAGCTATTCAAGATCAACTtagaacatttaaaactataggTGATCTTATTCATGATGCTAGAAATTTATTGGAAACTAAAGGCATTGATACCTATCGTTCAAAAACAAATCGGTTACAAAAACCTAGGACCGCATACATGTTGTTTTATACAGAACTTCTTcaaaaatacaagaaaaaacaTCCAGATTTAAAATTACCGCAGTTGACACAAATCATTGctgaaaaatatcataaattatctcctgaaaaaaaacaaacattactTGATAGAGCACAAAAATTAAAGACTGAATATATTGAATTGGTTGATAAAAGAAATGAAGGTTTCAAATTTAAGGAATCAAATAAACCAAAAACTCCATTTCAAGTTTTTATGGAATCGAAATCATCAGATTTAGAATTAGGTAGTGTTGATAAAGCtgaatttcaaaacaaattaaaagaaaagTGGGATGGTATGACAgaaaagaaaaaatcaaaatggaTTAAATTGGCAAATGAAAGAgaacaaacatatttaaataatctaaaagaAGACCACAAAAATGATCCTGCTTTCACTATGCCTACAAAAAGTGCATTGACCAAAGGTGATAGAAATATTTTGGATTCCCAATCAGGAAAACCAAAAAAACCTCCAGTCAATAATTATGGTCTTTTCTCTAAAGAAATGTTACAAAGTAATGCATTAGATGGAGTTCCTCCTAAAGAGAGAATGTCAATGTTGGCAAAGAAATGGAAAGCTTTTTCTGATGAAGAGCGACAAATGTATTCAGACAAGTTGAAAGTTATAACTGAGCGATATAAAACTGAATTTGAAGCATACTTAAACACCCTACcagaaaatgaaaaacaattggaaATGGCTAAAATCAAAGGAAAACCTAAGAAATCTGAGCCAAAAGTTGTACCTAGGATTAATGCTAGAGAAGTAATCTCAGAAAAacctacagaaaaaaataagaaaaaaggtACTTCGcaatataactcaaaaactaaaacATTCAAAAATGAACCAAAAGCAGTACCTTATAAAAATGCGTTTGAATTATACAGAAGTAAATTGGAACCAAATGAAAAACACCCAATTACAAGTTTAGAAGATTGGAACAAAAAAAATGGGAAAAAACAACTTATGTATGAAAACGAACTTAAAGCTCTTAAAAAagaatatatgaaaaatttgaaaGTGTTTTTAAGAGGTCTTTCTGAAGCCGATTTACAATTGTATCTACAACTGAGAAAACCTGaatttttaactgaaaataatgATTCTAGTGCCTCAGATGATGAAGAAAATTCTTCATCTGAagatgatgacgacgacgaagaAGATAATGATAAAGACGacgatgataatgatgatgatgatgatgatgatgattcagagtaa
Protein Sequence: MGLDRKRKSINALQSTDKKRKSITEKKPASSSSSSEDSDEQSDHDNGLNNEVKIENPTISRWPQDDIQKLLSKMELALPKNDNQTFRSRFTKLDWDKIQFDSYSKDECQSTWLAIQDQLRTFKTIGDLIHDARNLLETKGIDTYRSKTNRLQKPRTAYMLFYTELLQKYKKKHPDLKLPQLTQIIAEKYHKLSPEKKQTLLDRAQKLKTEYIELVDKRNEGFKFKESNKPKTPFQVFMESKSSDLELGSVDKAEFQNKLKEKWDGMTEKKKSKWIKLANEREQTYLNNLKEDHKNDPAFTMPTKSALTKGDRNILDSQSGKPKKPPVNNYGLFSKEMLQSNALDGVPPKERMSMLAKKWKAFSDEERQMYSDKLKVITERYKTEFEAYLNTLPENEKQLEMAKIKGKPKKSEPKVVPRINAREVISEKPTEKNKKKGTSQYNSKTKTFKNEPKAVPYKNAFELYRSKLEPNEKHPITSLEDWNKKNGKKQLMYENELKALKKEYMKNLKVFLRGLSEADLQLYLQLRKPEFLTENNDSSASDDEENSSSEDDDDDEEDNDKDDDDNDDDDDDDDSE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01167574;
90% Identity: iTF_01305519; iTF_01304146; iTF_00973016; iTF_01304826;
80% Identity: -