Sgrm006059.1
Basic Information
- Insect
- Schizaphis graminum
- Gene Symbol
- -
- Assembly
- GCA_003264975.1
- Location
- QEWZ01007790.1:837-18798[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 9.4 5.9e+03 -2.4 0.0 7 16 66 75 65 78 0.53 2 2 2.3e-10 1.4e-07 31.6 0.0 3 36 163 197 161 203 0.89
Sequence Information
- Coding Sequence
- ACAGTAAATGCCATAGCATATGCGTTCAATGAACTGTGGAATTCAGGGCATGTATTTGTGCGCTTTGCGGACGACCTGGCAGTGGTCGGCAGAGCCAGGACGGGACCGCAGCTCGAGGCCATCATGAATCCCGTACTCGACGCGATTGATAGGTGGATGAGGGCCAGAGGGCTGGAGCTGGCGCATCAGAAGAGCGAGGCGGTGATGTCGACGAGAAAGGGTCAGACTGGATCGCAGGATGACCTTCGTCGACCACGTTCGGTTTGCTGGAAAAAGGCGTTTGCATCGGCTAACGCGTTGGCAAGACTGATGCCGAACATCAAGGGTCCGGGGCAGTGGAAGAGAAGACTCCTGGCTTCCGTCGTGGAGAGCCAGCTTCTTTACGCTGCCCCGGTGTGGGTTGACACCGTCTACGCCTCGGCGAGATCGTGCCtcgtaactataaaaaaaagctTTGAGTCCGGATATAATGCCAATTATTCTGATGCTTCTTTACAAGAAGCATTATTGAAAATTGCCAATGGGGAATTATCAATTTTAGCAGctagtaaaaaatacaatataccttATGGTACTttgcataataaatatcatggaATGCACACAAAAGATATAGTTAGACAGACTGTTTTTAGTAATGAAGAAGAAAGATCAATATTGAAAACAGTAATTAAATGTGGTGATTGCGGGTTTCCATTATCACTCATGGATTTAAGaatcatATTAGGACAATAA
- Protein Sequence
- TVNAIAYAFNELWNSGHVFVRFADDLAVVGRARTGPQLEAIMNPVLDAIDRWMRARGLELAHQKSEAVMSTRKGQTGSQDDLRRPRSVCWKKAFASANALARLMPNIKGPGQWKRRLLASVVESQLLYAAPVWVDTVYASARSCLVTIKKSFESGYNANYSDASLQEALLKIANGELSILAASKKYNIPYGTLHNKYHGMHTKDIVRQTVFSNEEERSILKTVIKCGDCGFPLSLMDLRIILGQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01328538;
- 90% Identity
- iTF_01328538;
- 80% Identity
- iTF_01328538;