Sgrm008729.1
Basic Information
- Insect
- Schizaphis graminum
- Gene Symbol
- -
- Assembly
- GCA_003264975.1
- Location
- QEWZ01007791.1:5664-23502[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 7.6 4.7e+03 -2.1 0.0 7 16 25 34 24 37 0.53 2 2 1.7e-10 1.1e-07 32.0 0.0 3 36 122 156 120 162 0.89
Sequence Information
- Coding Sequence
- ATGAATCCCGTACTCGACGCGATTGATAGGTGGATGAGGGCCAGAGGGCTGGAGCTGGCGCATCAGAAGAGCGAGGCGGTGATGTCGACGAGAAAGGGTCAGACTGGATCGCAGGATGACCTTCGTCGACCACGTTCGGTTTGCTGGAAAAAGGCGTTTGCATCGGCTAACGCGTTGGCAAGACTGATGCCGAACATCAAGGGTCCGGGGCAGTGGAAGAGAAGACTCCTGGCTTCCGTCGTGGAGAGCCAGCTTCTTTACGCTGCCCCGGTGTGGGTTGACACCGTCTACGCCTCGGCGAGATCGTGCCtcgtaactataaaaaaaagctTTGAGTCCGGATATAATGCCAATTATTCTGATGCTTCTTTACAAGAAGCATTATTGAAAATTGCCAATGGGGAATTATCAATTTTAGCAGctagtaaaaaatacaatataccttATGGTACTttgcataataaatatcatggaATGCACACAAAAGATATAGTTAGACAGACTGTTTTTAGTAATGAAGAAGAAAGATCAATATTGAAAACAGTAATTAAATGTGGTGATTGCGGGTTTCCATTATCACTCATGGATTTAAGaatcatATTAGGACAATAA
- Protein Sequence
- MNPVLDAIDRWMRARGLELAHQKSEAVMSTRKGQTGSQDDLRRPRSVCWKKAFASANALARLMPNIKGPGQWKRRLLASVVESQLLYAAPVWVDTVYASARSCLVTIKKSFESGYNANYSDASLQEALLKIANGELSILAASKKYNIPYGTLHNKYHGMHTKDIVRQTVFSNEEERSILKTVIKCGDCGFPLSLMDLRIILGQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01328542;
- 90% Identity
- iTF_01328542;
- 80% Identity
- iTF_01328542;