Sgrm002601.1
Basic Information
- Insect
- Schizaphis graminum
- Gene Symbol
- bab1
- Assembly
- GCA_003264975.1
- Location
- QEWZ01001532.1:358472-400032[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 5.1e-15 3.2e-12 46.5 0.0 1 41 394 435 394 439 0.93 2 2 3.5 2.2e+03 -1.0 0.3 6 15 524 533 520 549 0.84
Sequence Information
- Coding Sequence
- ATGCAACCGAGCAACGGCTCCAAAGACGTGCCGTCGGCGGCGGCCGAGAAGACTTGCGGCGCGACAGGCGGTTCCGGCAACCAGCAGTTCTGCTTGCGTTGGAACAACTACCAGAGCAACCTGACCAACGTGTTCGACCAACTGCTGCAGAACGGCACGTTCGTGGACGTGACGATCGCCTGTGACGGTCATACACTCAAAGCGCACAAGATCGTGCTGTCCGCATGCAGCCCATACTTCCAGAGCATGCTGGCCGAGAATAAGTGCAAGCACCCGATCGTCATATTGAAAGACGTCCAGTGGCCCGAGCTTAGGGCAGTCGTCGATTTCATGTACAAGGGCGAGATAAACGTTTATCAGGAACAGATTGGCCCGCTGTTGCGCGTCGCCGAGACACTGAAAGTCCGCGGTTTGGCCGACGTCAGCAACGAACAACTCACCGGCGGCGGTGGATGTGAACCACAAGCCGCGGCCACTGTGGTGACGCCCACGACTGTAGCACCCGAATCTCCCAAACAGCCAGCCCGGAAGCGGCACAGGCTGTCACCACCGGCGGCTAGCCCAGAGTCTGTCATATCCGACATGGGATCGTCGGTCGCGGACACGCCGCTCAACTTACACCACATGCCACCACCTCCAGCCCCCAATCATCAGCAGCAAGCGCAGTCGCAACTATCGCACGTGCACcaccaacaacaacaacaacaacagcaacaacaacaacaacaacaacaacaacaacaacaacaacaacaacatcagcagcagcagcagcagcagcagcagcagcaacaacagcagcaacaacaccaacaacagcaacagcagcagcagcagcagcagcagcagcagtcgTCACAACAGCCACCGGCACCACAAGCCATGCCGCCGTCCGCCTCATCCGcttcatcgtcgtcgtcgtcatcgtcatcgaTACCACCGCCGAGCAGCGTGGCTGACGATATGGAGATAAAGCCCGGCATCGCCGAGATGATACGCGAGGAAGAAAGAGCCAAAATGTTTGAAAGTTCTCAGGCCTGGCTCGCATCCACGTCCTCGCCAATGACttcCGACAGTTACCAGTACCAGCTGCAGTCCATGTGGCAAAAGTGCTGGAACACCAACCAGAGCCTGGTGCACAACCTGCGGTTCAGAGAGCGCGGTCCGCTCAAGTCGTGGAGACCAGAAACGATGGCCGAGGCTATTCTGTCCGTGCTCAAGGAGGGCCTTTCGCTGTCGCAGGCAGCCCGCAAGTACGACATACCGTATCCGACGTTCGTGCTGTACGCCAACCGGGTGCACAACTTGCTCGGTCCATCCGCAGACGGCGGCGCAGACTTAAGGCCTAAAGGCAGAGGACGTCCTCAAAGGATATTGTTAGGATTTTGGCCAGAAGATCACATTCAAAATGTAATCAGGACTGTTGTGTTTAGAGACGCACAAAACATCAAAGAAGAAGCATTACACCTTTACCCAAGAATACcgtgTTTATCCGACCCAATGTCTGGTGGTCACTATGGTAACAACGCGGTTCAGTCGGTTGAAGGTCCCGTGTCGCCAAACTCTGCCGCGGCCGCAGTGGCTGCTGTCGCGCAGGGTATACGGCAGCAAATGATGGCCGCCGCCGGACATAACATCTCTCCTTCGTCGGGTGTTGACGCGTTCGCCCTACTCGCCTCTTCACACCTACCCAGTCCGGCTGACATGTCACCCAATTCGTCTCCACCCGATTCACCGTTAGTCTCCAACAACAACGTCGAGgTGAGTCTTAGCGGTTACAAGCGATCCATCGACCACTCCAACCAAGACAACGTGTTCGTCGAAGACATTGATGAGCTCGTGAAGAACAGCCATTGTACCGGAGGCTCATCAATGGGCAACAACATCGATCAGCAGCCGTTGCCGTTAGTCATCGAGCAACGgactgaataa
- Protein Sequence
- MQPSNGSKDVPSAAAEKTCGATGGSGNQQFCLRWNNYQSNLTNVFDQLLQNGTFVDVTIACDGHTLKAHKIVLSACSPYFQSMLAENKCKHPIVILKDVQWPELRAVVDFMYKGEINVYQEQIGPLLRVAETLKVRGLADVSNEQLTGGGGCEPQAAATVVTPTTVAPESPKQPARKRHRLSPPAASPESVISDMGSSVADTPLNLHHMPPPPAPNHQQQAQSQLSHVHHQQQQQQQQQQQQQQQQQQQQQQHQQQQQQQQQQQQQQQQHQQQQQQQQQQQQQQSSQQPPAPQAMPPSASSASSSSSSSSSIPPPSSVADDMEIKPGIAEMIREEERAKMFESSQAWLASTSSPMTSDSYQYQLQSMWQKCWNTNQSLVHNLRFRERGPLKSWRPETMAEAILSVLKEGLSLSQAARKYDIPYPTFVLYANRVHNLLGPSADGGADLRPKGRGRPQRILLGFWPEDHIQNVIRTVVFRDAQNIKEEALHLYPRIPCLSDPMSGGHYGNNAVQSVEGPVSPNSAAAAVAAVAQGIRQQMMAAAGHNISPSSGVDAFALLASSHLPSPADMSPNSSPPDSPLVSNNNVEVSLSGYKRSIDHSNQDNVFVEDIDELVKNSHCTGGSSMGNNIDQQPLPLVIEQRTE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01032794;
- 90% Identity
- iTF_01346551;
- 80% Identity
- iTF_01329081;