Sgrm017462.1
Basic Information
- Insect
- Schizaphis graminum
- Gene Symbol
- -
- Assembly
- GCA_003264975.1
- Location
- QEWZ01004129.1:5438-6235[-]
Transcription Factor Domain
- TF Family
- TSC22
- Domain
- TSC22 domain
- PFAM
- PF01166
- TF Group
- Basic Domians group
- Description
- These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Drosophila protein bunched [1] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis.
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 1.7e-07 0.00076 20.1 0.1 14 43 46 75 42 78 0.91 2 3 0.00077 3.3 8.4 0.1 18 45 78 105 74 116 0.85 3 3 2 8.8e+03 -2.5 0.0 17 31 214 228 212 232 0.75
Sequence Information
- Coding Sequence
- ATGTCGAAACCACATAGACCTGGTACGCCTATTTTGAATCAAAATCGTAACAATAAAACAGGTACCACCACGATTAGCTCTATCACAAATGAAGATATTATGGCAGCTATTTTGTCTGTCCAAACAACTCAAACTGAACAATTTGATGAGTTACGTAATTCGATTAAATCGTTGACTTCTGATATTATTGCCTTAAAATCAGAAAACTCTGTGCTACGCTCTGAGCTTGTGTCTCTTAAAGCTAAAGTAGGTGACCTTGAAAGTAATACTACTAAACATAGGTATGAAAACACGGTGGTCCAAATGTTACGTGAATCCAATGAGCGCAGTAGATGCAACCATAATATTCTTGTTTTTGGTATAACCGAGTCCACTGCTGATAATGGGGTTCAAAGGGCATTAGATGACAAGATTAATCTTACTAACTTGTTAAGTAGTCTTTCACTGCAGTTATCTTCTAATGTAAAATTGATTAGACTTGGTTCAAACACAGCAAAGAAACCAAGGCCGTTAAAAGTGTGTTTTCATTCAAAGAAAGAGGTTGATGACATGCTTTCAAGTTATGTCAATGCATTAAACAATGGTCTCCAAATTCCTACCAACTTCCGCATATCAAGGGATAGGACTTCGTTGGAACGTGATATTCTGCGTGCGGCCTATACTGAACTTAACCAAAGAAGAAAAGCGGGTGAATTGAACATTAAGGTCTCATTCATTAACGGTGTTCCATCTGTGGTCAAATTCAATTCAAAAAACTGGGTCCGTGGAAACAATATCAACCGACAACCAATGATTTAG
- Protein Sequence
- MSKPHRPGTPILNQNRNNKTGTTTISSITNEDIMAAILSVQTTQTEQFDELRNSIKSLTSDIIALKSENSVLRSELVSLKAKVGDLESNTTKHRYENTVVQMLRESNERSRCNHNILVFGITESTADNGVQRALDDKINLTNLLSSLSLQLSSNVKLIRLGSNTAKKPRPLKVCFHSKKEVDDMLSSYVNALNNGLQIPTNFRISRDRTSLERDILRAAYTELNQRRKAGELNIKVSFINGVPSVVKFNSKNWVRGNNINRQPMI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00134001;
- 90% Identity
- iTF_01328369;
- 80% Identity
- -