Sgrm023937.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Schizaphis graminum
Gene Symbol
Rfx2
Assembly
GCA_003264975.1
Location
QEWZ01004322.1:79214-84474[+]

Transcription Factor Domain

TF Family
RFX
Domain
RFX domain
PFAM
PF02257
TF Group
Basic Domians group
Description
RFX is a regulatory factor which binds to the X box of MHC class II genes and is essential for their expression. The DNA-binding domain of RFX is the central domain of the protein and binds ssDNA as either a monomer or homodimer [1]. It recognize X-boxes (DNA of the sequence 5'-GTNRCC(0-3N)RGYAAC-3', where N is any nucleotide, R is a purine and Y is a pyrimidine) using a highly conserved 76-residue DNA-binding domain (DBD) [2].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 2 1.7e-33 2.3e-29 102.4 0.1 4 78 251 325 248 326 0.97
2 2 1.3 1.7e+04 -3.0 0.0 13 36 465 486 461 507 0.71

Sequence Information

Coding Sequence
ATGGCGATTTCGGTAAGGACTAGAATCAAATTAGAAGAATCAGCTGGTACTAGCTCTCAAATTAATGctataactgttttaaaaactgGTGAGGTTGGTCAAACTCGTATAGTACAACAAACTTCTGTGaATATCAATAGTAATAGACAACTTGTAAATGCTATACCATGTGAAATTAATccagttcataataatatttctaataaattaacaGAAGATGATAAATATTGCCTAGATTATAAAGATAGAAATTCTTTTACAATTACTGTAGCACCATTGGTTCCCAAAATAGAGCCTATTGATTCTGATGACATTGATTCTACTTATGTGCAGTATAATGAAGAAACTGATAAACAagcaattttcaaaaatgaacaaaatatgaCGTGCCCAATTTATACTGTGAATGAGAGTGGAACAATGTATCAAGGTGGTCAGACCCATTACGCTCCAAGTAAAAATTCTTATTCAcaaGTTATAAACACCTTAGGCCAACCAACATGTCACACACAAATTATAAGTAATGGAACATATATTGTACAACAGAATATTGACAATTATCATACTATTATCTCTACTTCTCAAAGAAACAGCCCAAATTCTACTATGTCTTcggataTGTCATATCATACAGTAAGCACTATTGACTCTGACATAACAAACACAAATATAGATCAATTGAATGATATTAAGTTAAATACAGTAATGCAAAACTCCAGTGTTTTGCGTACAAATAAAATTTCTCCTCTAATTatcAACTGGCTGATGGAAAATTATGAAATGGCTGAAGGAGTGTCATTACTTCGATCaacaatatataatcattatttaatacattgctCGAAAACTAAAATCGATCCTGTAATTGGACCATCATTTGGTAAAATTATCCGATCTGTGTTTACAGGATTACGTACAAGACGTCTTGGAACTCGaggAAATTccaaatatcattattatggtattaaaattaaagctaattctttattaaatgactttaaagaagaaaaaaacctACCAgatcaaacaaacaaaaatagtagtagttcaaaaaatattaaatttattaacacgGAAGAGCAAAATTGCAATCAATATACCAATAACAGTTCAAATTCTACTAATTGTTTTCAAAACTTTATTCCATCTTCTCCTCAAGCACAAGACCAAGAATATTTAGGCGATGGTACTAATGTTATACCAGAATTTCctgatattatattgaatgaacTAGAATTGGATGATAATTGTACTTTAGAAGATGTAGATACATTCAAAAATTTGTACCGTGAACATTATGAAGCATTTTTAGGTGCTATATTGAATTTAGAATTTAACACTGTTAAGTCACTCTGGTGTCAATTTTGGGGTAGtcgagataataataatgatgaatctgaagaaaaaaaatgtttatctaaaaaaaagttatattcatTGTCCAAGTGCAAAACATTGCAACTATTTGTGAAAACTGCTGACTttctattttatcaaaatttggtGAAAGTTTTAATTCCAGATGTTCTTCGGCCTGTTCCTAGAACATTAACACAAGCCATTAGACATTTTTCCAAAGGAGTAGAGTCATGGCTTATTTCAGCAATACAGGGATACCCAGAAGAAatgatttcaataaaagtGACTGCTGTTAGAACCTTTGCACAAACATTACGTAGATATACTACTGCAAGAGCTGAGCTTCAAAATTATACCCAAATAAATCAAATGCTTACTGATTTGAATCACGTGGACTTCCCTAATATACAAGAACCAGTTCAACTAATAAGTACTTTGGGAACTGAAAATGATTCAGTTTATATAAAGAAGAgagtttatagtaaaataaatgaatgcTCTGAAATGCTTTCGGATTTTAATGAACtctctaaaaaaacaaaaactcaCAACTGTTCAGCCACTACTTCTACAGATACAGAATGTTTTAATGTCTTAGTAAAAAATCCATCTAAAGAAACCAACAACAATAAATCTAAGatggaAATAAAAGAAGAAATACAGTTGAAAGATGAATttgtacaaaaacataatttaaaaatagagtaCTTGAAAGAAGATATATATGAAGACCATACACAAGAAATATACAATGatactGCTATGATTAACTCTTCTTACAATCCAAGTATTTCAGAAGTCCATAAAGAGTACCCTAAATTATCTCATAAATTATCAACAAAACAAAAGAAtgaacagaaaataataattaagg
Protein Sequence
MAISVRTRIKLEESAGTSSQINAITVLKTGEVGQTRIVQQTSVNINSNRQLVNAIPCEINPVHNNISNKLTEDDKYCLDYKDRNSFTITVAPLVPKIEPIDSDDIDSTYVQYNEETDKQAIFKNEQNMTCPIYTVNESGTMYQGGQTHYAPSKNSYSQVINTLGQPTCHTQIISNGTYIVQQNIDNYHTIISTSQRNSPNSTMSSDMSYHTVSTIDSDITNTNIDQLNDIKLNTVMQNSSVLRTNKISPLIINWLMENYEMAEGVSLLRSTIYNHYLIHCSKTKIDPVIGPSFGKIIRSVFTGLRTRRLGTRGNSKYHYYGIKIKANSLLNDFKEEKNLPDQTNKNSSSSKNIKFINTEEQNCNQYTNNSSNSTNCFQNFIPSSPQAQDQEYLGDGTNVIPEFPDIILNELELDDNCTLEDVDTFKNLYREHYEAFLGAILNLEFNTVKSLWCQFWGSRDNNNDESEEKKCLSKKKLYSLSKCKTLQLFVKTADFLFYQNLVKVLIPDVLRPVPRTLTQAIRHFSKGVESWLISAIQGYPEEMISIKVTAVRTFAQTLRRYTTARAELQNYTQINQMLTDLNHVDFPNIQEPVQLISTLGTENDSVYIKKRVYSKINECSEMLSDFNELSKKTKTHNCSATTSTDTECFNVLVKNPSKETNNNKSKMEIKEEIQLKDEFVQKHNLKIEYLKEDIYEDHTQEIYNDTAMINSSYNPSISEVHKEYPKLSHKLSTKQKNEQKIIIK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
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