Stum005231.1
Basic Information
- Insect
- Scaptomyza tumidula
- Gene Symbol
- -
- Assembly
- GCA_035044465.1
- Location
- JAWNNW010000444.1:7603326-7604063[+]
Transcription Factor Domain
- TF Family
- zf-LITAF-like
- Domain
- zf-LITAF-like domain
- PFAM
- PF10601
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family display a conserved zinc ribbon structure [3] with the motif C-XX-C- separated from the more C-terminal HX-C(P)X-C-X4-G-R motif by a variable region of usually 25-30 (hydrophobic) residues. Although it belongs to one of the zinc finger's fold groups (zinc ribbon), this particular domain was first identified in LPS-induced tumour necrosis alpha factor (LITAF) which is produced in mammalian cells after being challenged with lipopolysaccharide (LPS)[2]. The hydrophobic region probably inserts into the membrane rather than traversing it. Such an insertion brings together the N- and C-terminal C-XX-C motifs to form a compact Zn2+-binding structure [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.7e-07 0.00021 21.3 7.3 2 69 26 84 25 85 0.85
Sequence Information
- Coding Sequence
- ATGACCAAAGTTGAGCCCCAAATAATTGCTATTAGCATCTCCAGCAGCAAGCCCCAAGTGGGCTATCTGCTAAAAGAGTCCACAATGGTTAATTGTCCTGCCTGTGAACACTTTGAGATGAGCAATGTGCAACACGAAGCGGTTACTTTGCTGCAACGGCTGCTGAATCTAACAAAGCTGTGTAAAAAATGGTCTGGACGCATGGATATCAATCATTATTGCGCACATTGTGGCTGTTATATTGGACGTTATGTGCCAATTAGTTGCTACGAACGTTGCATATCTAGATCAGCCCGAAAACAGGCTGTTGTGGATGAGATGCGACTAAAGGAGAAGCCAAAGGATTGCGCTGTCCGTGCACAAAAGTCAAGGGAAAAAATACTGGCCACGCGAGCCGAGAAACGTGCCCAAAAAGAAGCCCAAAGTCGAAaccaaacgcaaacgcaaactgTGGTGCCCAAgtaa
- Protein Sequence
- MTKVEPQIIAISISSSKPQVGYLLKESTMVNCPACEHFEMSNVQHEAVTLLQRLLNLTKLCKKWSGRMDINHYCAHCGCYIGRYVPISCYERCISRSARKQAVVDEMRLKEKPKDCAVRAQKSREKILATRAEKRAQKEAQSRNQTQTQTVVPK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00497825; iTF_01320867; iTF_00482662; iTF_00577447; iTF_00557577; iTF_00620267; iTF_01327563; iTF_00498545; iTF_00610321; iTF_01323060; iTF_01321591; iTF_01325338;
- 90% Identity
- -
- 80% Identity
- -