Stum012330.1
Basic Information
- Insect
- Scaptomyza tumidula
- Gene Symbol
- -
- Assembly
- GCA_035044465.1
- Location
- JAWNNW010000812.1:3381320-3387659[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.047 3.3 8.3 0.2 1 23 1349 1372 1349 1372 0.94 2 13 4.2 3e+02 2.2 0.2 1 23 1540 1562 1540 1562 0.91 3 13 0.00017 0.012 16.0 2.7 2 23 1565 1586 1565 1586 0.97 4 13 6.5e-05 0.0046 17.3 0.2 3 23 1594 1614 1592 1614 0.98 5 13 5.4e-07 3.9e-05 23.8 4.1 2 23 1621 1642 1620 1642 0.97 6 13 5.1 3.7e+02 1.9 0.4 5 23 1655 1673 1653 1673 0.96 7 13 1.3 91 3.8 5.4 3 23 1680 1701 1678 1701 0.93 8 13 1 71 4.1 0.2 2 23 1712 1732 1711 1732 0.95 9 13 5.2e-05 0.0037 17.6 0.4 1 19 1738 1756 1738 1760 0.95 10 13 1.5e-05 0.0011 19.3 0.5 1 23 1768 1790 1768 1790 0.98 11 13 9.7e-05 0.0069 16.8 7.6 1 23 1796 1818 1796 1819 0.96 12 13 0.00019 0.013 15.8 5.9 1 23 1824 1846 1824 1846 0.98 13 13 0.027 1.9 9.1 8.2 1 23 1852 1874 1852 1875 0.95
Sequence Information
- Coding Sequence
- ATGGTGGACAGTGTGCAGTGCCCCGTGTGCACTTTGTATTTGCATGCGGGCATGAATCTCTCCGATCATTTGGAGACACATCCCAAGGAGCAGGTCATTAGGGCACTAGTGCAAATGACCATTGCCGGCAATCCTGGCGGACTGGATAGCGCCCTGGCGGCAGCTGTGATATCTGGCAGCAATctcagcagcagtagcaaaaaCGCTGCCTCAACAGAAAACGCTACCCCAACTCCAGTTGCTGACGTTAAACCAGATCTTGCTCCAATAGCACAAACAcaaccaccgccaccaccaacagcagcagcagcagcatcagcaacaaccacaacgcaATCAACCGCACCCAAAGCTGTCGCATTGCTGGAcaacgccagcaacagcaacaacaacaacaacaaattgaacaatCCACCGATTAAGGCAGTGAAAAGCGCGCCACCCACGACTGAGGCGCCAGCCACAACatccaataacaacaaccacaacaacaacacacccACCATAAGCAGCGTGGCCGCTGTCTATCCGGCAGCCCTGGCAACAGACTATCGTtacgaacagcagcagcagcagctgcatggCTTTCCACGTGGCACAACCACCACACTGGTGATACCACAAGCGCCACAGCAGCACCATAATTTCTTGGCCAACCAACAGCCGCCTGCGCACTTTGCTCTtcagccgcagcaacagcagtcaaCCATGAAGTTTACatatgcaacagcagcgctGCCTCCGCCTCCTTTGCAGCTTTTTGCGCAGCAGCCGACGTCAACGCAGCCGCATCAGAAACCTCCACCCGCCTATGGCGCCGCCATCAGTCAAATTCGATCTCAgcacaaccaaaacaaacaacaacaacatcaacatcaaaaccaacaccagcagcaacaacaacagcaacacattaACGTACAACAACATACCGTTAATGTAGCACCACCGAGTGGCAAACAACATAGCAACAAAATCCAAACGGATATCTTTCTAAATCCACCTCCACCGCCACAACTAACAATTCCATCAGCATGTTCTGCGTCTTcgtcgttatcgttatcgttagcGTCGAACTCCTCTCGACTGCAGCAtgcccaacaacagcagcaccaacaatcTCATGCagctagcagcagcaattaTGCAGCTGGCAGCTGTTCCAGCTCCTCCTCGGTAGCTTTAATGTCCGCCACAACGTCCGCACGAGCAACTAGCCGTCAGTCAAGTGCTTCGCCCTTTGGTGCACTGTTAAATGCAGCGGCTCATGCTGCCTGCTCCTCACCCGCCGCTTCCACCACTGGAACATCAGTGCTGCGCTACGCCGAGTCGCCAGTGGCTCACTATCTGGAGCGGGAGAATGGGGATTTCATAGTGCAGGAGACGCCAAAACACATTGTGGAGTGTGTCGAGAAAGATGATGGAGAGTTTTCGGTAATAGAGCGCATCTATCAGTCACCACCCAGTGTACTCCACATAcacgatgacgacgatgatgaagaggaggaggaagagcagcagcaggaagaagaagaagatcaGGGTTGGGCAAAcagcgatgatgatgagaatGAGAATCACGTTAAGGTGTCACTAGGACATGTCGAGGATGGTGACGATGAGCACGAGGATAGTCGCAGCCGTGCTGGCCCCAAAACCACAACGAAAAAGTCACGCAAGCCAAAGTCTAGTGGCAGAATGCACAAACGTTCTACTAAGCATCAGTTGGCCACGATGGCGGACGACGATGACTTCATGAGTATTGGAAGCAGTTGTGCCGAAAGCGATCATCAGCCAGAGgagcatcaacagctgcaaccagcgcagcaacagcagcagccgccgccgcaACAACATCATCGACAGCCGTCATCGTCGACTGCGACACAAGTGGCAAACACATTGCCAATGCAACTTTGCACGGCGCCTTCCACAAGCAGTGGAGCAGCTGGCACTTGTTCCCCGAGCAGTTCGAAGTTCACGGGCAGCGGCACCATCAAGTCCAAAAAGAATCGAGTGACTGTGCTCAGCGATGTGCCGCTCAACATGAACGAGTATTTGGATTTGGTGGGCAACATTGTGGCCTCAAGTCGCATTGGTGCAGCGCGTCCTTTTGCCGCTGTGGCGCCCATACCGTTGGTGAAGGTGGAAAAGGAGGAGCCAATGGACGAATACGAAGCCGATCCAGTGGATATGCAGTTGGAGCAAAAGCCCAGTCTGGATCATAACAGtggtagcagtagcagcaatagcagcagtaGTGGCCATGGCACCACTAGCGTCATACGCATGGCCAGCACCAGTGCAAATGTTGCAGCCGAAGATCTCACACAGCCGCCGCACATGAAAGTGGAGGTGGAGCCAACGGCACTGTTGCCACAGCGCTTCTCGGCGCCCGGTCAGCTGCGTGGACCCAAGAAATTAGTCATCAAACCAAAGgtaacagcaacggcaacggcaacgtccacaacgacgacgacgacgacgaaaaaGACTGAGAACAAAAACGCTGCCGGTAGGAatggtagcagcagcagcaatagcaatagtaATTGCGCCGAATCCCACAGCATATCAGCAAATACGCCCGCCGAGCTTGTGCAGATCAAGAACGAGAATGTCGAAGCATCCACATCCAATGGCAGTATATTGGAAAAGCATCTGACCAACAGCTATGCGGCACAGCAGGCACGCAAACACTCTGCAGtcaacgatgatgatgcacGTGTACTGCTTGAGTTTGCCAACTCCAAGCAACTGCCATTGCCAGGCACGAGCAATCATACAACGTTTGTGGTGAACGCAGCCAGTTTTGCGTCAGCGGGTTCCGTATTTGCCACAAGCGGAAGCACAATCAGTGGCAATGTGCATAAGTCAACCAAGTCGGCCGATGAATACATTCTGCCAGATGACGCTAAATTGGAGGTGGATGAAATTATGATATCCTCCTCGTCTTCCTATGCATCCAcctcgcagcagcagcagcaacagcagcatctacaacaacagcaacaacaacaacagcagcaacaacaacagtcttTGCAACAGGCGCATCCGTCCGCCTTCACTGACTTTAATTTTCTgtaccaccaacacacaacagcaacagcagctgcagcaacaacaacgactgcTTCCAACTTTGCACCATTTGGcatacaacagcagcaatcgctgcagctgcaacatccACAGCATGGCTCCAGCGAGGCAACTAATGCTGCAACGCTTGCTTCCTCCAGCAATTCGTCTGCCTTGGATCAGGAATGCTCGATGAATGCCACTTTCCGTGTGGCCAAGCCACCATCAATGCTAAGCGGTTGGTATCAaccacatcagcagcagcagcatcagcagccaaCGACTTCATCGCATGTggagcagcccagcaattttATTGCAGCTCTATCCGCTGTCGACTGCTGCAATGCAGCCGTTGATAGCGATATCAGTGAGGCTAAGTACTTGGATCTGGATGCCTGCAAGCGGGAACAGCTTAGTAACAGTAGCAGCCATTTGCCCTCTGCATCCACCACATCGTCATCGTTTCAAGCCGCTGCAACGGAGAGCAGCCTTGTTGGTGGTCTAGGTCTGAATATACGTACCGATGAGAAGATGCCCGCCAAGGGTGAAATATCCGAGCAGGAAAGCAACTGCGACATTGAGAACTCTTGGAGTCAATCGATGTATGGGGACATATCACAGCGTTACTTTAGAAATCAATTTACGGATGGCTACAATCAGCAGCTGGCGGATTGGCGTCATGATTACTATCCGGCGCAAGATCTCAGTGGCCAACAGAGGGAGCCAAAGCGCTTTGACTTTAACGCGGTCGCCTCGGAGTACGCACAGCCGACAGAGCTTGAAGCTTCCTCAGGCTTAGCTAGAAACAATCATTTGTTGGATGCACAGCCCACCACTtcctcatcgtcatcggcTTTGCTGGCTGGTCCACCAATAGCCTCGACATCGCGCGCTGCCGCCGAAGCGGAGGCAGTTGCAGCAGCGCTGGCGCAACGAAAGCCACCACGTCGCAAGATCTACAAGTGTCCGCACTGTGTGGCTATCTTCGAGAAGCTTAAGGAGCGCAATGCCCACATGATTGGTGAGCACAACTATGTGCGTCAGAATCGTCGATTGATATGTACACAAGCGCTGGTAACCGCTGCGATGCTGGTACAGCCGCAGGTTCAGCAGACAGAACAGCAActagagcaacagcagcagcaacacttgcTGCAGCCGGGGCACAGCCCAGGCGATGCTGTACACGAGGATTCCAAGGATGGTATTGTGAAGATCAAGCAGGAGCACTGTCAGGATAAACACGATTCAGCCTCGGAGCAGTTGCTAGGACACTTAGAGTTGCCGGATGTCAAGGATGCTGGGCTGCTCGAAACCAGCGGTGAAAACGGTCGCGATGCAGACATGAAGCCACCAACCAGCGTGACTGATCTGGACGAAAAGCCAGGCATAGCACCGCTGGCCATGACAACACCAGCTGCCAAATTGGCGGCTCTGTATCGCATGCTTATAGCCTACAACGAATCGAAGCTGGGCCAGGACCGCAACAATCTCAGCGAACTGGAACAAAAAGCCATGGAGAAATCCATATTCTTGTGCTACATCTGCCGCACCGATTTTCCCTCTGTCAAGCTGTACGATGCACATTTAACGGAACATCCGGCCGAGTGTTTCACGTGCGGCAAGAAATTCTATCGTTGGAAGAACTTTTCGCTGCATCTGAAACGGCATCTGGGCTGGAAGGAGTTCGGCTGTTATGTTTGCGACAAAAAGTTTGTAGTGCGCAGCGCTCTGGTCGAGCACATGCGCATGCATACTGGCCAAACACCACTCAAATGCAAGATATGTGGTAAAAAGTTCAAGCGGTATTCTAACTTGACGCAGCATCGCAAACGCCACACAAAGATGACAGTGCGCAAGAAGGAATATGTGTGCCACTGTGGCGAGGTGTTGCCGTCAAAGGCGCGCTTCCTTTGGCATAAGGAGACGCACGACTTGAAGCCCAAATGCTGTCCGTACTGTTGCGATCGTTTTGTGCATGCCAACTCGCTGCGTCGACACATTCGACTGGCGCATTCGGATAAGTTTGACTATGCTGAGCCCATGGAGTGTGCCATGTGCAAACAGATCTTTGCCAAGACATCTATTAAGGCGCATATGGCGACGCATTCGACGGATCCGCAATACGACTGCGCTATTTGCAACAAGAGCTTTTCCACCAAATGGAATCTCAAGATACATTCGTGGGTGCATGCGAATCGTACGGCCAAACCGTTCAAGTGCGAGTATTGTCCTAAGGCATTTGTACGTGAATTGGACTTTAAGAACCACATGAATGCGCACAAGCAGATCAAACCCTACACCTGCGAATATTGTGGTTGCAAGTTCATACGCAAGTACAACTATATGCGGCATCGACGTGAGCATCATGGCAACAAGAAGTTTACGTGCGATCAGTGCGACAAGTCTTTCCATCGACACTACTATCTGATTGAGCATCGGCGTATTCACACTGGCGAGCGACCGTTCCACTGCACCATTTGTGGCAAGAGCTCGACCACAAAGACCAATCACAATAAACATCTTAAAATTCATCATTCGCGCGATCCTTTCACTGTTGAGGTCTAA
- Protein Sequence
- MVDSVQCPVCTLYLHAGMNLSDHLETHPKEQVIRALVQMTIAGNPGGLDSALAAAVISGSNLSSSSKNAASTENATPTPVADVKPDLAPIAQTQPPPPPTAAAAASATTTTQSTAPKAVALLDNASNSNNNNNKLNNPPIKAVKSAPPTTEAPATTSNNNNHNNNTPTISSVAAVYPAALATDYRYEQQQQQLHGFPRGTTTTLVIPQAPQQHHNFLANQQPPAHFALQPQQQQSTMKFTYATAALPPPPLQLFAQQPTSTQPHQKPPPAYGAAISQIRSQHNQNKQQQHQHQNQHQQQQQQQHINVQQHTVNVAPPSGKQHSNKIQTDIFLNPPPPPQLTIPSACSASSSLSLSLASNSSRLQHAQQQQHQQSHAASSSNYAAGSCSSSSSVALMSATTSARATSRQSSASPFGALLNAAAHAACSSPAASTTGTSVLRYAESPVAHYLERENGDFIVQETPKHIVECVEKDDGEFSVIERIYQSPPSVLHIHDDDDDEEEEEEQQQEEEEDQGWANSDDDENENHVKVSLGHVEDGDDEHEDSRSRAGPKTTTKKSRKPKSSGRMHKRSTKHQLATMADDDDFMSIGSSCAESDHQPEEHQQLQPAQQQQQPPPQQHHRQPSSSTATQVANTLPMQLCTAPSTSSGAAGTCSPSSSKFTGSGTIKSKKNRVTVLSDVPLNMNEYLDLVGNIVASSRIGAARPFAAVAPIPLVKVEKEEPMDEYEADPVDMQLEQKPSLDHNSGSSSSNSSSSGHGTTSVIRMASTSANVAAEDLTQPPHMKVEVEPTALLPQRFSAPGQLRGPKKLVIKPKVTATATATSTTTTTTTKKTENKNAAGRNGSSSSNSNSNCAESHSISANTPAELVQIKNENVEASTSNGSILEKHLTNSYAAQQARKHSAVNDDDARVLLEFANSKQLPLPGTSNHTTFVVNAASFASAGSVFATSGSTISGNVHKSTKSADEYILPDDAKLEVDEIMISSSSSYASTSQQQQQQQHLQQQQQQQQQQQQQSLQQAHPSAFTDFNFLYHQHTTATAAAATTTTASNFAPFGIQQQQSLQLQHPQHGSSEATNAATLASSSNSSALDQECSMNATFRVAKPPSMLSGWYQPHQQQQHQQPTTSSHVEQPSNFIAALSAVDCCNAAVDSDISEAKYLDLDACKREQLSNSSSHLPSASTTSSSFQAAATESSLVGGLGLNIRTDEKMPAKGEISEQESNCDIENSWSQSMYGDISQRYFRNQFTDGYNQQLADWRHDYYPAQDLSGQQREPKRFDFNAVASEYAQPTELEASSGLARNNHLLDAQPTTSSSSSALLAGPPIASTSRAAAEAEAVAAALAQRKPPRRKIYKCPHCVAIFEKLKERNAHMIGEHNYVRQNRRLICTQALVTAAMLVQPQVQQTEQQLEQQQQQHLLQPGHSPGDAVHEDSKDGIVKIKQEHCQDKHDSASEQLLGHLELPDVKDAGLLETSGENGRDADMKPPTSVTDLDEKPGIAPLAMTTPAAKLAALYRMLIAYNESKLGQDRNNLSELEQKAMEKSIFLCYICRTDFPSVKLYDAHLTEHPAECFTCGKKFYRWKNFSLHLKRHLGWKEFGCYVCDKKFVVRSALVEHMRMHTGQTPLKCKICGKKFKRYSNLTQHRKRHTKMTVRKKEYVCHCGEVLPSKARFLWHKETHDLKPKCCPYCCDRFVHANSLRRHIRLAHSDKFDYAEPMECAMCKQIFAKTSIKAHMATHSTDPQYDCAICNKSFSTKWNLKIHSWVHANRTAKPFKCEYCPKAFVRELDFKNHMNAHKQIKPYTCEYCGCKFIRKYNYMRHRREHHGNKKFTCDQCDKSFHRHYYLIEHRRIHTGERPFHCTICGKSSTTKTNHNKHLKIHHSRDPFTVEV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00583141;
- 90% Identity
- iTF_01321369;
- 80% Identity
- -