Basic Information

Insect: Scaptomyza reducta
Gene Symbol: -
Assembly: GCA_035044485.1
Location: JAWNNV010000387.1:2823687-2827702[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.00055 0.038 14.4 0.1 1 23 150 173 150 173 0.96

2 14 0.00041 0.028 14.8 2.7 2 23 222 244 218 244 0.94

3 14 0.012 0.84 10.2 0.9 1 23 358 381 358 381 0.93

4 14 0.31 21 5.8 2.8 2 23 430 452 429 452 0.96

5 14 0.0035 0.24 11.9 0.6 1 23 516 539 516 539 0.88

6 14 2.1 1.5e+02 3.1 0.0 2 14 558 570 557 582 0.84

7 14 0.00068 0.047 14.1 3.3 2 23 590 612 590 612 0.96

8 14 0.053 3.6 8.2 0.1 1 23 713 736 713 736 0.93

9 14 8.5e-05 0.0059 17.0 0.2 1 23 775 798 775 798 0.94

10 14 0.00049 0.034 14.6 2.7 2 23 848 870 847 870 0.97

11 14 0.0042 0.29 11.6 2.1 1 23 964 987 964 987 0.91

12 14 0.013 0.87 10.1 1.4 1 21 1039 1059 1039 1060 0.95

13 14 0.024 1.6 9.3 0.2 2 23 1102 1126 1101 1126 0.92

14 14 3.8 2.6e+02 2.3 0.5 1 23 1144 1168 1144 1168 0.69

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.00055	0.038	14.4	0.1	1	23	150	173	150	173	0.96
2	14	0.00041	0.028	14.8	2.7	2	23	222	244	218	244	0.94
3	14	0.012	0.84	10.2	0.9	1	23	358	381	358	381	0.93
4	14	0.31	21	5.8	2.8	2	23	430	452	429	452	0.96
5	14	0.0035	0.24	11.9	0.6	1	23	516	539	516	539	0.88
6	14	2.1	1.5e+02	3.1	0.0	2	14	558	570	557	582	0.84
7	14	0.00068	0.047	14.1	3.3	2	23	590	612	590	612	0.96
8	14	0.053	3.6	8.2	0.1	1	23	713	736	713	736	0.93
9	14	8.5e-05	0.0059	17.0	0.2	1	23	775	798	775	798	0.94
10	14	0.00049	0.034	14.6	2.7	2	23	848	870	847	870	0.97
11	14	0.0042	0.29	11.6	2.1	1	23	964	987	964	987	0.91
12	14	0.013	0.87	10.1	1.4	1	21	1039	1059	1039	1060	0.95
13	14	0.024	1.6	9.3	0.2	2	23	1102	1126	1101	1126	0.92
14	14	3.8	2.6e+02	2.3	0.5	1	23	1144	1168	1144	1168	0.69

Sequence Information

Coding Sequence: ATGGAAGGCATGGATCTGTGGAATTATATGTTTTCGGCCGATTTTGAAGAAGCTGATGGCGAGTCAAACAATCATAATTATGCAGACGAGACTAATGGCGAAGACAAAGATGCGAATGAGCAAGAGGCTTCAAATAATGATGAAGTCGAAAAAGGACCCGAACCAGATGACGATgctatatttgattttgaattaaCGCCACTTGTTGGCGTTGCGGAGCCCGATCAAGATCCACCGCCTAGAACTTCTGTTCGATTGGCGCCACCAATGCCGGTTGCAACGCCCGTGCGAGCCTCATATAATAAACAACCAACGTCTGGCTCCTCTTCTTCTCATACGGGAGCAGGTCGAGGTGAAGTCGCCGCCCCAGCCACACGACCAACAATATCACAAATCAATGCTTTTGACGAGAACGGAGTGCAAATTAATTACGAACTGGGCGTCATCTATATATGCCCCGCCTGCGGTTCAGAATACCGTCAGCAGGATTCGTGGAAACGTCACATGAACCAGGTTCATCAGTATAACACGCGCCGTGGCCTAAATTTTGCGGCCATCGATAAGCTGTATCATCGGTGCTTGGAATGCAACAAGCGGATTGCGATGCACAGTCGGGAAAATCTGCTCAAGCACAAGTTCACCCATTTGCCATATCGTTGCACGAAGTGCAACATCTGCAAGCGTGAGTACAAGTACAGACAGGACTTAATGGTGCACCTGCGCATGGTACACTGTGACGAGATAGTTTCCAAGATGCGCGAATGTGATGTCAGTGCTGGACGTAAGACACGGGTACGCTTACCGCGTGTTGAGCAGCGTGTTCAAAGTGCGGGCCGGTTCTATTCGATCGCCAACGGCCCGGTTCCCGACGGTGATGAGTTTATAGAAGTCAAGAACGAGCTGATGGATGCGGAAGTAATTACTGACGATGTAGGTCGTGACGATAATGACGATCTAAATCGCAGCTCAAATCAGGCGCAGAAAAAACGTGTTAATGATCTAACAGGCTTTGGCAACGCTGACAACAGACTAGGCAGAGGTGCGTCGGACATTTGCGAGGACTATATACATTACATGTGCCCAGATTGCGGTACCGACTGCGACACGCATGCACAGTGGAGCCAGCACATTGAATTCGTGCACGACTATGTCAGCCGACGGGGATTGAACTTTCGTAGCGTTGAAATGCAGATGCAGTGTCTTGAATGCAAGGAGTTTGTCACCCCGAACACTATAAAGACACTGCGTGCGCACAAGTTTAGTCATTTGCCACAGTCGGATTGGATTCGTTGCAAGTTGTGCTATCAGGGATATACGGAGCATCATGAGCTGGTCACGCATCTGCTCAAGCAGCATAATCTGGACACCATAATGCCAGAAAGAAAGGAGCAGGAGCCGAGACCTAGTGCCACTGCCGGAGATGATGCTGATGACAACTCCGGAATTGATAATGGTTGCGATGATGAATCTCTGTTGCCATTTGATGATGCGCCCCGCCGGAGCGGTCGCATAAGCGGCGATGATATGTATGAGCAACATATTGATTATTTGTGCCCGCAGTGCGGTCGGGAGTTCATTGAGAAAAAGCATTGGCGCACACATGTCGTCCAGATGCATGGCATGAATGACCTagccaaattgaattttgaggtTGTCAACGATCGTCAGCTTCAGTGCACTGAGTGCGACAAGATCATAACGAATGCCTATGGCATACAGAATGCCCAACAGCACAGAATTACCCATCTGCCCTACAAGGCTTTTGCTCGCTGTCGCAAATGCCACAAATCCTACACAGATCGCAAGGGTCTGGTAAAGCATTTAGCAACATACCATCGAATCGGCTATGAACATCGCAAATCCGGTACTGGAGAAGTGACAGCCGGTGCGGAACAAAGCCAGGCTAAGCCACAAACACCGCGCAAGCAAATTGTGACTGTTGCAAATGAAACGTATGAGATTACCTATTTGGATGAGGAGCAATCACCGCCAagtaataacaatataaatgaGGAAAATGATTTTGGCGAACAAATGCAAGCCGATGATAATGATTATGCTATTACCTGCAATAGCACACGTCAACTGCAACCAGCTGAAGGTAGCAACTCTGCAGCCAATCCGAATGCGAATCGTTATAAATGCATTGATTGCGGATCCTTGTTTGCCACACAAACAGCGCTTAAAATGCATATAAGCGATGAGCATGATTTTATGGACACACAATATAGTGGCAAAAAGTTTGACAATGACAAAGCAACAGACGAAACGCCGCTACCGAAAATCTATTCTGGCGGTTCGACAATCGAACAGAACTACATATATCTGTGCCCATCCTGTGGCAAGCCGTATAAGACGCAATTCGAGTGGCGTCGACACATTAACGAGGTGCATAGCTTTGATAAGCGGCAATCTTTGAATATGCGCCAGCTGGACAAATTTCGTTATCAGTGCACACAGTGCAAAGACATTGTGAGCAATTCAAAGCTTAAAGGACTCCAAGATCATCATTTTCGACATTTACCTTATAGGCTTTACCTAAAGTGTCTAGTATGCGGCACCTGCTATAATCACAAACCGAACATGGCTGCCCATCTACGCACACGTCACAACATCTGTGAGCGCAGTACGCCCTGGCGTGAGATGCAACCCAAGCCGCAGAATGGCAatgaaatcaccaagaacgAGGATAGGAATATACCAGAGACTACTCCGGATAGGTCCGACTCACCCACacatgccagcagcagcagtaactgCAACATTAACATCAACACTGTTCGCTCACTTAAACCGCAGGCCGGGTTGCTGCCAATACGACCCGCTGGCCTGAATACACTTGAGGATAGCATCTCCTATCACAACGCTGTTGATCTAGATTTCATAACATACTTCTGCCCCAAGTGCAACAAGAACTTTGATTCGCACGCGTTCTGGCGGAAACACATTGTCGAGCAGCACAACTTGAACAGTCGGCAGGGTTTGAACTTTACCCAGATTGATAATCATCACTATCTGTGTTTGGAGTGCTACAAACGGGTAACTGTCACCCACACCAAGGGTGCTATTGGTCAGCTGCAGTCGCACAAGTTTCGACATCTTCCCTATCGCTCTTTCAAATGCTTAACATGCAATGCTGAATTTGTTCgcaagcaaatgtttttcaaacaTCTTAATCGCGATACTAATCGCTGCGATAGTAAACCATTGAGCGACGACGATTTCAATGGTGAACACACTGCAGATCAGCCTGAGAGACCAGCGTCCGTTAACAATGAAATTGATGCCGCTTCGTATCGCCTGATTTGTCCGCAGTGTGGCGATAACTTTAGTACCAGCACTCAAGCCGTGCTGCGTCGGCATATTAAAACGCAACATGGTCTGGGCAAGCGTGAGGCGCTGCACATGCGCAAGCTGGGCGACGAGCTCTATCGCTGTATGGATTGCGACGAGCAGCTGGTAACGAAACGATTGCGTGTTCTTCAGGACCATCGCTTCCGACATTTGGCCTATGCTGCCTATATACGTTGCCAGCTTTgcgagcaacaacagccagatGAACGCGGCCACGGACCCAATCCAGCCGGAATGCACAGCATGCTTGAGCTGCAGCAACATATGCGCGATGAGCATGCCTCATACGCAAAAAATGATAAGCAAATGCAAGTGCTATTGGATGCGGATGTGGACGACGACAGCCAACTTTCGGCGGCAGCAGCGACTAACGACGAGCCGTGCGGCAATGATTCGCGTTATATGCCGCTGCCGCCACATTTGATGGACGAAGACGTTGATGACACAGAGTTCGAGGATCAATATCTACTGGGCTAA
Protein Sequence: MEGMDLWNYMFSADFEEADGESNNHNYADETNGEDKDANEQEASNNDEVEKGPEPDDDAIFDFELTPLVGVAEPDQDPPPRTSVRLAPPMPVATPVRASYNKQPTSGSSSSHTGAGRGEVAAPATRPTISQINAFDENGVQINYELGVIYICPACGSEYRQQDSWKRHMNQVHQYNTRRGLNFAAIDKLYHRCLECNKRIAMHSRENLLKHKFTHLPYRCTKCNICKREYKYRQDLMVHLRMVHCDEIVSKMRECDVSAGRKTRVRLPRVEQRVQSAGRFYSIANGPVPDGDEFIEVKNELMDAEVITDDVGRDDNDDLNRSSNQAQKKRVNDLTGFGNADNRLGRGASDICEDYIHYMCPDCGTDCDTHAQWSQHIEFVHDYVSRRGLNFRSVEMQMQCLECKEFVTPNTIKTLRAHKFSHLPQSDWIRCKLCYQGYTEHHELVTHLLKQHNLDTIMPERKEQEPRPSATAGDDADDNSGIDNGCDDESLLPFDDAPRRSGRISGDDMYEQHIDYLCPQCGREFIEKKHWRTHVVQMHGMNDLAKLNFEVVNDRQLQCTECDKIITNAYGIQNAQQHRITHLPYKAFARCRKCHKSYTDRKGLVKHLATYHRIGYEHRKSGTGEVTAGAEQSQAKPQTPRKQIVTVANETYEITYLDEEQSPPSNNNINEENDFGEQMQADDNDYAITCNSTRQLQPAEGSNSAANPNANRYKCIDCGSLFATQTALKMHISDEHDFMDTQYSGKKFDNDKATDETPLPKIYSGGSTIEQNYIYLCPSCGKPYKTQFEWRRHINEVHSFDKRQSLNMRQLDKFRYQCTQCKDIVSNSKLKGLQDHHFRHLPYRLYLKCLVCGTCYNHKPNMAAHLRTRHNICERSTPWREMQPKPQNGNEITKNEDRNIPETTPDRSDSPTHASSSSNCNININTVRSLKPQAGLLPIRPAGLNTLEDSISYHNAVDLDFITYFCPKCNKNFDSHAFWRKHIVEQHNLNSRQGLNFTQIDNHHYLCLECYKRVTVTHTKGAIGQLQSHKFRHLPYRSFKCLTCNAEFVRKQMFFKHLNRDTNRCDSKPLSDDDFNGEHTADQPERPASVNNEIDAASYRLICPQCGDNFSTSTQAVLRRHIKTQHGLGKREALHMRKLGDELYRCMDCDEQLVTKRLRVLQDHRFRHLAYAAYIRCQLCEQQQPDERGHGPNPAGMHSMLELQQHMRDEHASYAKNDKQMQVLLDADVDDDSQLSAAAATNDEPCGNDSRYMPLPPHLMDEDVDDTEFEDQYLLG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01321486;
90% Identity: -
80% Identity: -