Basic Information

Insect: Scaptomyza cyrtandrae
Gene Symbol: -
Assembly: GCA_035044605.1
Location: JAWNNS010000640.1:23995582-23999574[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.00057 0.043 14.4 0.1 1 23 150 173 150 173 0.96

2 14 0.00043 0.032 14.8 2.7 2 23 222 244 218 244 0.94

3 14 0.019 1.4 9.6 0.5 1 23 358 381 358 381 0.93

4 14 3.5 2.6e+02 2.5 2.6 2 23 430 452 429 452 0.95

5 14 0.0037 0.27 11.8 0.6 1 23 515 538 515 538 0.88

6 14 2.2 1.6e+02 3.1 0.0 2 14 557 569 556 581 0.84

7 14 0.00071 0.052 14.1 3.3 2 23 589 611 589 611 0.96

8 14 0.046 3.4 8.4 0.0 1 23 712 735 712 735 0.93

9 14 8.9e-05 0.0066 16.9 0.2 1 23 774 797 774 797 0.94

10 14 0.00051 0.037 14.5 2.7 2 23 847 869 846 869 0.97

11 14 0.0044 0.33 11.6 2.1 1 23 957 980 957 980 0.91

12 14 0.054 4 8.2 1.5 1 21 1032 1052 1032 1053 0.95

13 14 2 1.5e+02 3.2 0.3 3 23 1097 1120 1096 1120 0.78

14 14 4.7 3.5e+02 2.1 0.4 1 20 1138 1159 1138 1162 0.62

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.00057	0.043	14.4	0.1	1	23	150	173	150	173	0.96
2	14	0.00043	0.032	14.8	2.7	2	23	222	244	218	244	0.94
3	14	0.019	1.4	9.6	0.5	1	23	358	381	358	381	0.93
4	14	3.5	2.6e+02	2.5	2.6	2	23	430	452	429	452	0.95
5	14	0.0037	0.27	11.8	0.6	1	23	515	538	515	538	0.88
6	14	2.2	1.6e+02	3.1	0.0	2	14	557	569	556	581	0.84
7	14	0.00071	0.052	14.1	3.3	2	23	589	611	589	611	0.96
8	14	0.046	3.4	8.4	0.0	1	23	712	735	712	735	0.93
9	14	8.9e-05	0.0066	16.9	0.2	1	23	774	797	774	797	0.94
10	14	0.00051	0.037	14.5	2.7	2	23	847	869	846	869	0.97
11	14	0.0044	0.33	11.6	2.1	1	23	957	980	957	980	0.91
12	14	0.054	4	8.2	1.5	1	21	1032	1052	1032	1053	0.95
13	14	2	1.5e+02	3.2	0.3	3	23	1097	1120	1096	1120	0.78
14	14	4.7	3.5e+02	2.1	0.4	1	20	1138	1159	1138	1162	0.62

Sequence Information

Coding Sequence: ATGGAAGGTATGGATCTGTGGAATTATATGTTTTCGGCCGACTTTGAAGAGGGTGATGGCGAGTCAAACAATCATAATAATGCAGACGATAATAAtggcgaagaaaaaaaagcgaatGAGCAAGAGGCTTCAAATAATGATGAAGTCGAAAAAGGACCCGACCCAGATGACGATgctatatttgattttgaattaaCACCACTTGTTGGAGTTGCGGAGCCCGATCAAGATCCACCTCCTAGATCATCTGTTGGATTGGCGACACCGAAGCCAGTTGCACCGCCTGTGCGAGCCTCACATCATCACCAACCGACGTCTGGCTCCTCTTCATCACAGACTAGTGGAGGTCGAGGTGAAGCCGTCGCCCCAGCCACACGACCTACGATATCACAAATCAATGCTTTTGACGAGAACGGAGTGCCTATTAACTACGAACTTGGCGTCATCTATATATGCCCCGCCTGCGGTTCCGAATACCGTCAGCAGGATTCGTGGAAACGCCACATGAACCAGATTCATCAATATAACACGCGCCGTGGCCTCAACTTTGCAGCCATCGACAAGTTATATCATCGGTGCCTGGAATGCAACAAACGAATTGCAATGCACAGTCGGGAGAATCTGCTCAAGCACAAGTTCACCCATTTGCCATATCGTTGCACAAAGTGCAACATCTGCAAACGTGAGTACAAGTACAGACAGGACCTAATGGTGCATCTGCGCATGGTACACTGTGATGAGATAGTTGCAATGATGCGTGAATGTGATGTTAGCGCTGGACGTAAGACACGGGTCCGCTTACCGCGTCTCGAGCAGCCTGTTCAAAGTGCTGGTCGGTTCTATTCGATCGCCAACGGCCCGGTTCCCGACTTTGATGAGTGTATAGAGGTTAAGAACGAGCTGATGGATCCGGATGTAATTACTGCCGATGCAGGTCGTGACGATAATGACGATCCAAATCGCAGCTCAAATAAGGCGCAGAAAAGGCGTTTTAATTCTCTAACAGGCGCTGGCAACGCTGAAAACAGAATTGGCAGCGTTTCGTCGGACATTTGCGAGGACTATATACATTACATGTGCCCTGACTGCGGTGCCGAGTGCGACACGCATGCACAGTGGAGCCAGCACATTGAATTCGTGCACGACTATGTCAGCCGGCGGGGGTTGAACTTTCGTAGCGTTGAAATGCAGATGCAGTGCCTTGAATGCAAGGAGTTTGTCACCCCGAATACTATGAAGACTCTGCGTGCGCACAAGTTTAGCCATTTGCCGCAGCCGGAGTGGATTCGTTGCAAGCTGTGCTATCAGGGATACACGGAGCATCATGTGTTGGTCACGCATCTGCTTAAGCAGCATAATTTGGACACCATAATGCCCGGAAAGGAGCAGGAGGCAAGGCCAAGTGCCACTGCCGGTGATGATACTGATGACAACTCCGGCATTGATAATGGTTGCGATGATGAATCTCTGTTGCCATTTGATGATGCACCCCGTCGAAGCGGTCGCATAAGCGTCGATGATATGTATGAGCCACACATTGATTATTTGTGCCCGCAGTGCGGCCGGGAGTTCATTGAGAAAAAGCATTGGCGCACACATGTCGTCCAGATGCACGGCATGAATGATCTAGCCAAATTAAACTTTGAGGTCGTCAACGATCGTCAGCTTCAGTGCACTGAATGCGACAAGATCATAACGAATGCCTATGGCATACAGAATGCTCAGCAGCACAGAATTACCCATCTGCCCTACAAGGCATTTGCCCGCTGTCGCAAATGCCACAAATCGTATACTGATCGCAAGGGTCTGGTCAAGCATTTGGCCACATACCATCGTGTCGGGTATGAACCTCGTAAATCCGGTGCTGGAGAAGTGACAACCGGTGCAGGACAAAGTCAGGCCAAGCCACAAACACCTCGCAAGCAAATTGTGACTGTTGCAAATGAAACGTATGAGATAACCTATTTAGATGAGGAGCAATCGCCGCCaagtaataacaatattaatgAGGAAAATGATTTTGGCGAACAAATGCAAGCGGATGACGATGATTATGCCATTAGCTGCACTAGCACACATCAGTTGCCACCAGCTGAAGCTAGCACGTCTGCAGCCAATCCGAATGCCAATCGTTATAAATGCATTGATTGCGGATCCTTGTTTCCCACACAAGCAGCacttaaaatacacataagCGACGAGCACGACTTTACAGACACTCAATATAGTGGCAAAAAGTTTGACAATGACAAATCAACAGAGGAAACGGCGCTACCGAAAATCTATTCTGGCGGTTCGACAATCGAACAGAACTACATATATCTGTGCCCATCCTGTGGCAAGCCGTATAAGACTCAATTCGAGTGGCGTCGACACATTAACGAGGTGCACAGTTTTGACAAACGGCAATCTTTGAACATGCGACAGTTGGATAAATTTCGTTTTCAGTGCACACAGTGCAAGGACATTGTGAGCAACTCAAAGCTTAAAGGACTGCAAGATCATCACTTTCGACACCTGCCATATAGGCTGTACCTAAAGTGTTTAGTGTGCGGCACCTGCTATAATCACAAACCCAACATGGCTGCCCATCTACGCACCCGTCACAACATCTGTGAGCGCAGTACGCCCTGGCGTGAGGTGCAGCCCAAGCCGCAGAATGGCAATGAAATCACTAATAACAGGGATAGGAATATACCGGATACTACTCCGGAAAGGTCCGAATCACCCATAcaagccagcagcagcagcaacattggTCGCTCACTGAAACCGCAGGCCGGGTTGCTGCCATTACGACCCGCTGGCCTAAATACACTAGAGGATAGCATTTCCTATCACAATGCTGTTGATCTGGACTTcataacatacttttgccccaagtgcaacaaaaactttgattCGCACGCGTTCTGGCGGAAACACATTGTCGAGCAGCACAACTTGAACAGTCGGCAGGGTTTGAACTTTACCCAGATTGATAATCATCACTATCTGTGCCTGGAGTGCTACAAAAGGGTTACAGTCACCCATACCAAGGGTGCCATTGGTCAGCTGCAGTCGCACAAGTTTCGACATCTTCCCTATCGCTCTTTCAAGTGCTTGACGTGCAATGGTGAATTTGTTCGcaagcaaatgttttttaaacatcTTAACCGCGATACCAATCGCTGCGATAGCAAACCATTAGACGAAGACGAGTTCAATGGTGACCAACACACTGCAGAGCAGCCAGAGAGACCAGCGTCCGTTGATAAATCAATTGATGCCGCTTCGTATCGCCTGCTATGCCCGCAGTGCGGCGATAACTTTAGTACCAGCATTCAATCTGTATGGCGCCGGCATATTAAAACTCAACATGGTCTGGGCAAGCGAGAGGCGCTGCACATGCGCAAGTTGGGCGACGAGCTCTATCGCTGTATGGATTGCGACGAACAGCTGGCAACGAAACGATTGCGTGTTCTGCAGGATCATCGCTTCCGACATTTGCCCTATGCTGCCTATATACGTTGTCAGCTTTGCGAGCAAGAGCAGCCAGATGAACTCGGTCACGGACCGGAACCAGTTGGAATGCACAGCATGCTTGAGCTGCAGCAACATATGCGCGATGAGCATCCCTCGTATGCAAAAAACGATGAGCAAATGCAAGTGCTTTTAGATGCGGATGTGGACGACGACAGCCAACTTTCGGCGGCAGCAGCGACTAACGACGCGCCGCCTGGCAATGATTCGTATATGCCAATGCCGCTACAAACGCTGCTTGACGGGGAAGGAGATGAGGATGTTGCGTCACCTGATAATGACGCTTCCGGCAATGGGCGTTATATGCCGCTGCCGCCACATTTGATGGACGAAGACGTTGATGACACAGAGTTCGAGGATCAATATCTACTGGGCTAA
Protein Sequence: MEGMDLWNYMFSADFEEGDGESNNHNNADDNNGEEKKANEQEASNNDEVEKGPDPDDDAIFDFELTPLVGVAEPDQDPPPRSSVGLATPKPVAPPVRASHHHQPTSGSSSSQTSGGRGEAVAPATRPTISQINAFDENGVPINYELGVIYICPACGSEYRQQDSWKRHMNQIHQYNTRRGLNFAAIDKLYHRCLECNKRIAMHSRENLLKHKFTHLPYRCTKCNICKREYKYRQDLMVHLRMVHCDEIVAMMRECDVSAGRKTRVRLPRLEQPVQSAGRFYSIANGPVPDFDECIEVKNELMDPDVITADAGRDDNDDPNRSSNKAQKRRFNSLTGAGNAENRIGSVSSDICEDYIHYMCPDCGAECDTHAQWSQHIEFVHDYVSRRGLNFRSVEMQMQCLECKEFVTPNTMKTLRAHKFSHLPQPEWIRCKLCYQGYTEHHVLVTHLLKQHNLDTIMPGKEQEARPSATAGDDTDDNSGIDNGCDDESLLPFDDAPRRSGRISVDDMYEPHIDYLCPQCGREFIEKKHWRTHVVQMHGMNDLAKLNFEVVNDRQLQCTECDKIITNAYGIQNAQQHRITHLPYKAFARCRKCHKSYTDRKGLVKHLATYHRVGYEPRKSGAGEVTTGAGQSQAKPQTPRKQIVTVANETYEITYLDEEQSPPSNNNINEENDFGEQMQADDDDYAISCTSTHQLPPAEASTSAANPNANRYKCIDCGSLFPTQAALKIHISDEHDFTDTQYSGKKFDNDKSTEETALPKIYSGGSTIEQNYIYLCPSCGKPYKTQFEWRRHINEVHSFDKRQSLNMRQLDKFRFQCTQCKDIVSNSKLKGLQDHHFRHLPYRLYLKCLVCGTCYNHKPNMAAHLRTRHNICERSTPWREVQPKPQNGNEITNNRDRNIPDTTPERSESPIQASSSSNIGRSLKPQAGLLPLRPAGLNTLEDSISYHNAVDLDFITYFCPKCNKNFDSHAFWRKHIVEQHNLNSRQGLNFTQIDNHHYLCLECYKRVTVTHTKGAIGQLQSHKFRHLPYRSFKCLTCNGEFVRKQMFFKHLNRDTNRCDSKPLDEDEFNGDQHTAEQPERPASVDKSIDAASYRLLCPQCGDNFSTSIQSVWRRHIKTQHGLGKREALHMRKLGDELYRCMDCDEQLATKRLRVLQDHRFRHLPYAAYIRCQLCEQEQPDELGHGPEPVGMHSMLELQQHMRDEHPSYAKNDEQMQVLLDADVDDDSQLSAAAATNDAPPGNDSYMPMPLQTLLDGEGDEDVASPDNDASGNGRYMPLPPHLMDEDVDDTEFEDQYLLG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01327425; iTF_01328173;
90% Identity: iTF_01328173;
80% Identity: -