Sred012550.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Scaptomyza reducta
Gene Symbol
RREB1
Assembly
GCA_035044485.1
Location
JAWNNV010001144.1:11314-18922[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 13 0.0057 0.39 11.2 0.6 1 21 262 282 262 284 0.96
2 13 0.00032 0.022 15.1 0.2 1 23 294 316 294 316 0.98
3 13 7.8e-05 0.0054 17.1 7.3 1 23 322 344 322 344 0.98
4 13 0.85 59 4.4 1.5 2 20 564 582 564 584 0.93
5 13 0.015 1.1 9.9 0.2 1 23 727 749 727 749 0.97
6 13 1.2e-05 0.00083 19.6 0.7 1 23 759 781 759 781 0.99
7 13 0.0008 0.056 13.9 2.0 1 23 787 810 787 810 0.97
8 13 0.0029 0.2 12.1 2.0 1 23 1118 1141 1118 1141 0.95
9 13 8.4e-05 0.0058 17.0 0.3 2 23 1482 1503 1481 1503 0.97
10 13 0.14 9.7 6.8 6.3 1 23 1509 1532 1509 1532 0.97
11 13 9.1 6.3e+02 1.1 3.4 1 23 1669 1692 1669 1692 0.78
12 13 0.0082 0.56 10.7 0.5 3 23 1758 1778 1756 1778 0.96
13 13 0.0013 0.09 13.2 4.8 1 23 1784 1806 1784 1806 0.99

Sequence Information

Coding Sequence
atGCTGGccacacaccaacaacaacaacaacagcagccagcagcaacaacaacaacaacagtaacaacaacagtaacaacagtaacagtaacagatgatgatgttgctcgCGATTTGCAGCGACAGCGTCGCGATTCCAGCACCTCCGAATCCTCGCTGGAACATTTGGACTTGGGCCGCACACCCAAAaagctcagcagcagcagcggcgcaCCGCAGCCAACGTCGACGCCACACGTCGATGCCGCTgctgcgacagcgacagcgtcGTCGCGCAAACGCAAACTGCgaccgcaacagcaacagcaacaacaacagcaacaacaacaacaacaattgccgcTGTCCGatgaggagcagcagcagcagcaactgttagATCCCGCCGCGCAGCGACCGCGTCACAAGCAGCGACGCAGCGCCATCACAGCCGCTGCCAGCGCCAGCATCGTCGTCGACTACAGCGCCAGCGGCGACGCCAGCTCGCTGCGGAAAAAGTTTCGCCTCAATCGCAGCACAGCGAGCAGCAATGGCGCCGCTAACGGTGATTTATCCGAATCGGGTTTCGTCGATGGCAGCAGCGCTATTCTgctcaccaacaacaacaacaacagcaccaacaacagcaccaacaacagcaccaacaacagcgcTGTTGCagcgcagtcgcagtcgcagcaaGCGTCAAGCGCCAGCAGCTCGGGCGGCTCCTCGCCCCAGGGCCTCTCCTCGTACCCATCGAGCGCCGAATCGGGCATCGGCGCCGGCGATGACCACATGAAGTATGTGTGTCCCATCTGCGAGGTGGTCTCGGCCACGCCCCACGAATTCACCAATCACATTCGCTGCCACAATTATGCCAACGGCGACACCGAGAACTTCACCTGCCGCATCTGCTCCAAGGTCCTCTCGTCGGCATCCTCCCTAGACCGTCATGTCCTAGTTCATACGGGAGAGCGACCCTTCAACTGTCGCTATTGCCATCTGACCTTCACCACGAATGGGAACATGCATCGACATATGCGAACACACAAGCAACATCAGACATCGCAGCAGCCGCaaacccaacagcagcaacagcagcaaacacaacagcaacagttgcaacaatcgcaacagcaacaacagcagcgacgacAGCAACACGGAGCAGGAGTAACTGGTTCCGGATCGGGTGTACAACTGTTGCCAGCTCGGGCGGAGAGCTATGAGAGCGATGCCAGCTGCTCCACAGATGTGTCcagtcacagcagcagcaacagcaacagcaacagcaacagcaacagcaatcacaacaacaacaatagccacaaagcgaacaacaacaataacaacaacaatgaggaTGAACTGCAGCTGAAGCAGCGACGCCGCAAAGCAACCctgaataacaacaacaacatcatacGAGATGAACCTGATCGCTTGGAGGAGGATCGGCATGATGATTCCGATGTGGATAGTGTTGATAGCGTTGCCCAGGTCATAACCAGTACGCCCGATGTGGCAACACTGCTCGCCTCCGGTGGTACCTCACCCACCCACTCGGaatcgccgtcgccgtcgccgtcgccgtcgccctCGCCGCCGCTCCGGCTGCAGAGCTGCCCGGCGTGCAATATGGGTGAATTTGAATCTGTGCCAGCGCTGTGCGCTCACCTGGATGCGGAGCATGCGGACATACCGGCCAAGTGTCGGGAGTGCGAGGTCATCTATGCGACCCATCGACAGCTGCAGGCGCACAGCTGTCGGGGACTACCGCCGCTACTGGGTGTCAGTTCCTCGCCGCTGCACAAGCAGGAGCAAGAGGAGGACCAGGACGacgaggaggagcaggaggacCATGATGATGAGGTTGAGGAGAAGGAACAGTTGGAGCAGCGCGAATGCGAAGACTTCTTTCAGCAGCTCTACCTCAAGAACAAGGTCTCCACCGCAACACTCTCTCTACCCTCACCCATCAAGCACGAGCCGACGGATCAGCGTCAGGATCTGGCCGACATCCAGAGCATACTCAACATGACCAGCTCCAGCTGCACCTCCAGCTTTCTGCGCAACTTCGAGCAGTCGGTCAATACGCCCTGCTCCAGCCAGTACAGCGTCGATGGACGCGACGGCGAGGAGGAGGCACAGGATGCCTTCACCAGCGAGTTCCGACGCATGAAGCTACGCGGCGAATTCCCCTGCAAGCTCTGCACCGCCGTCTTTCCCAATCTGCGCGCCCTGAAGGGTCACAATCGGTATCATTTGTCGGAGGTGGGAGCTACCGGACCCTTCCGCTGCAACATGTGCCCCTATGCCGTCTGCGACAAGGCCGCCCTGGTACGTCACATGCGCACCCACAATGGGGACCGTCCGTACGAGTGTGCCGTGTGCAATTATGCGTTCACCACCAAGGCGAACTGTGAGCGACATTTGCGGAACCGTCATGGCAAGACCAGTCGGGAGGATGTGAAGCGTGCCATTGTCTATCATCCGGCCGAGGATGCCAGCTGCGAGGAGAACAGCAACAGGTCTCGTTTCGATGGGGAGCTGCTGAACGAGTTGAGTGGTGGTAGTGCAGGTGGTGGAGGTGGTAGTGCTGGTAGTGcaggtggtgctggtggttgCAGTGGTGGTAGTGCTGGTGCTGGTAGTGTTGCTGGTATTGCTGGTAGTGCTGGTAGTGTTGCTGGTATTGCTGGTAGTGCTGGTAGTGCTGGTAGTGCTGCTGGTTATCgttgtgccacgcccaccgaGCATAGTTCCTCGGGCAGttcgtcgcagtcgcagctgAAGCACATGTTGCTGGCGGAAGCAACAACCacgacaacaccaacagcaacagcaacagcaacagcaccacaGCAACCACCGCTGAAGATCCAAGTAAAGAGCTTGGATCAGCTGGTGGATAAGCCGATGCCAGCTCTAGATCTGAGCATGGATGTGCTCGACTTGAGCAAGAAGCCCGCACAGCTGATCCCGGAGCAAAGACATGAATTGCtgcagccacaacagcaacagcaacaacaacagcaacagcagcagcagcagcaacagcaattgttTGGCGCTGGTGATGCTGCCACACAGTACATGCAACAGCTGTTGCGCAACTTTATGTTGCAACAATCGCCGGGATTTCCGTTCTTTGGCTTCATggcgccgccgccgccagcagcaaccgttgcagctgcagcagctgcagcagcagcagcagagaaaTTGCCACCAACTGCTGCCTTGCcgctgcccctgcccctgccactgcccctgcccctgcccgcCGGCGGGCCCGTCAAGATGGTCATCAAGAACGGTGTCCTGATGCCGAAGCAGAAGCAACGTCGCTACCGCACCGAACGTCCCTTCGCCTGCGAGCATTGCTCCGCCCGGTTCACCCTGCGCTCCAACATGGAGCGCCACGTGAAGCAGCAACATCCGAACCACTATGCCACACGCCAGCGCAGCGGACACCATGTGATGCGCGGACGTGCCGCGTCCAGCCAGGCTCAGGCTCatgcggcggcagcagctgctgctgctgctgctgctgctgcagcagcaatcaacaatctcagccagcagcagcaacattcgCATCATGTTCATGCCCCAATTTCGGAGCAGGTGAAGTACGCGATCCTGACGCAGCAGTTGAAGGCGCGCAAGGACACCGATCTGTTGCAGCAGGCGCTGGCCCATGGCTCCAGCAGTGTCGTGCCGAATCCTTTCCTGCACTTCGgctacaccaacaacagcagcaacggcaacggcaacggcaacggcaacagcaacaagcaacagcagcaacagttggtgCTGGATGATGATGAGCCGCCCAAGCTCATCATCGACGAGGACGATGAGGACGCGGAGGGTTGTGTGGacgacgaggaggaggaggaggaggagcaggacTTCGATATGGACGaagaggaggagcaggaggcGGAGGAAATGGAGCAACAACATCGGCCCGAGGAGACCAAGACTAGCAAACCCATGGAGGCAGCCAAAAAGGTCGCCGAGATCATACTCGAGCAAGCCATCAAGGAGCAAGTGGAGcagccaacaccaacaccaacaacaacacagttgGAGACGCCACCACAAGTTGcaccgccaacaacaatgaaaacgaTGATTGCCCAAGCCGAATCGGTGGCCAAATCCCTGAAGGAGGTGGCCAGCTCACCGTTCAAGGACGAATCTCAGGACCTGGTGCCGGTGGCCAAACTGGTGGACAATGCCACCAGCAATCAGGTGTCCTTCAACAGCTACTTCCGGCCCAGCGACGTCGCCAACCACATGGAGCAGAGCGACGAGGAGGGACTCGTCGCCAGCGGCAGCGCCAGCGAGAGCAACAACTCCGGCACCGAGGATGTCACCAGCTccggcagcagctgcggcaACGATACCAAGAAGAAGTCCGCCTACAGCTTGGCGCCCAATCGGGTCAGTTGCCCCTATTGCCAGCGCATGTTCCCCTGGAGCAGCTCGCTCCGGCGCCACATCCTCACCCACACCGGCCAGAAGCCCTTCAAGTGCTCCCACTGCCCGCTGCTCTTCACCACGAAGAGCAACTGCGATCGCCATCTGTTGCGCAAGCATGGCAACGTCGAGTCCGCCATGTCCGTCTATGTGCCCACCGAGGATGTGAGTGAGCCCATACCGGTGCCCAAGTCGGTGGAGGAGATCGAGCTGGAGGAGCAGCGCCGCCGGCAGGCAGCCGAAGCGGAAAGGGAGCGGGAGCGGGAACGGGAGCGGGAACGGGAGCGGGAAAGGGAGCGTGAGCGGGAGCAGGAGCGGGATCGGGAGCGCGAGCGGGAGCAGGAGCGGGATCGGGAGcgggaacaacaacagctgatcCAACAACTGCGCCAACAAATGgctgccgcagctgctgcagctgcatccgttgccgccgccgccgccgtggTGGTCGCTGCTCCAGCTCCCGCCCAATCCCCGCCAGGTGGTGTTGTGGGTGGTGTCCTGGAGCCCAGCAGCGATCTGCCCTACAAGTGTCATCTGTGCGAGTTCTCGTTTGGGGAACGTCTCCAGTGCCTGGAGCACATCAAGCAGCTGCATGCCCATGAGTTTGCGCTCCTGCTGGCCAAAGGCGCCATCGAAACGgatgcacagcagcagcaacagttgcccgCCAATCCCCATTCGGATGatgaggcagcagcagcagcagcagcagcgggggCAGCAACGGGGGCAACAACTGTCGTCCGAACCGGCGGCAAGTATCCGGACTATAGCAATCGCAAGGTCATCTGCGCCTTCTGTGTGCGTCGCTTCTGGTCCACGGAGGATTTGCGCCGCCATATGCGCACCCATTCGGGGGAGCGTCCCTTCCAGTGCGAGATCTGTCTGAGGAAGTTCACCCTGAAGCACAGCATGCTGCGGCACATGAAGAAGCACAATGGACGCAGTCACAATGGTGGCGAGATGGATCATCAGTCGGATTGTTCTGACGAtgagcaattgttgttgtgctcgcCGCCCACGACGCCAAcacccaccaacaacaacaacagcaacacttgccagaacaacaataacaccactaacaacaacaacaacaacaacaacacgaagcAAGTGCTGCGCGAACTTTTGGGCAAAACGAACGAGTGGCGCCTCAATCGTGGCGAGCACAAGGAGAACATTgccgaagcagcagcagccgcagcagcagcagcaacagcagcagcagcagcagcagcagcagcagcaacaacaccagcatccccagcaacaactgttgttgccAGCGGCGATCTAATTGGCAATCTATTAGGCATCAGTGATCAAGGCATACTCAACAAGTTGCTCTCCTCGCCCGACGAGGCCGCCAAGCTGCTCGGCGTGGAGAAGTAA
Protein Sequence
MLATHQQQQQQQPAATTTTTVTTTVTTVTVTDDDVARDLQRQRRDSSTSESSLEHLDLGRTPKKLSSSSGAPQPTSTPHVDAAAATATASSRKRKLRPQQQQQQQQQQQQQQLPLSDEEQQQQQLLDPAAQRPRHKQRRSAITAAASASIVVDYSASGDASSLRKKFRLNRSTASSNGAANGDLSESGFVDGSSAILLTNNNNNSTNNSTNNSTNNSAVAAQSQSQQASSASSSGGSSPQGLSSYPSSAESGIGAGDDHMKYVCPICEVVSATPHEFTNHIRCHNYANGDTENFTCRICSKVLSSASSLDRHVLVHTGERPFNCRYCHLTFTTNGNMHRHMRTHKQHQTSQQPQTQQQQQQQTQQQQLQQSQQQQQQRRQQHGAGVTGSGSGVQLLPARAESYESDASCSTDVSSHSSSNSNSNSNSNSNHNNNNSHKANNNNNNNNEDELQLKQRRRKATLNNNNNIIRDEPDRLEEDRHDDSDVDSVDSVAQVITSTPDVATLLASGGTSPTHSESPSPSPSPSPSPPLRLQSCPACNMGEFESVPALCAHLDAEHADIPAKCRECEVIYATHRQLQAHSCRGLPPLLGVSSSPLHKQEQEEDQDDEEEQEDHDDEVEEKEQLEQRECEDFFQQLYLKNKVSTATLSLPSPIKHEPTDQRQDLADIQSILNMTSSSCTSSFLRNFEQSVNTPCSSQYSVDGRDGEEEAQDAFTSEFRRMKLRGEFPCKLCTAVFPNLRALKGHNRYHLSEVGATGPFRCNMCPYAVCDKAALVRHMRTHNGDRPYECAVCNYAFTTKANCERHLRNRHGKTSREDVKRAIVYHPAEDASCEENSNRSRFDGELLNELSGGSAGGGGGSAGSAGGAGGCSGGSAGAGSVAGIAGSAGSVAGIAGSAGSAGSAAGYRCATPTEHSSSGSSSQSQLKHMLLAEATTTTTPTATATATAPQQPPLKIQVKSLDQLVDKPMPALDLSMDVLDLSKKPAQLIPEQRHELLQPQQQQQQQQQQQQQQQQQLFGAGDAATQYMQQLLRNFMLQQSPGFPFFGFMAPPPPAATVAAAAAAAAAAEKLPPTAALPLPLPLPLPLPLPAGGPVKMVIKNGVLMPKQKQRRYRTERPFACEHCSARFTLRSNMERHVKQQHPNHYATRQRSGHHVMRGRAASSQAQAHAAAAAAAAAAAAAAAINNLSQQQQHSHHVHAPISEQVKYAILTQQLKARKDTDLLQQALAHGSSSVVPNPFLHFGYTNNSSNGNGNGNGNSNKQQQQQLVLDDDEPPKLIIDEDDEDAEGCVDDEEEEEEEQDFDMDEEEEQEAEEMEQQHRPEETKTSKPMEAAKKVAEIILEQAIKEQVEQPTPTPTTTQLETPPQVAPPTTMKTMIAQAESVAKSLKEVASSPFKDESQDLVPVAKLVDNATSNQVSFNSYFRPSDVANHMEQSDEEGLVASGSASESNNSGTEDVTSSGSSCGNDTKKKSAYSLAPNRVSCPYCQRMFPWSSSLRRHILTHTGQKPFKCSHCPLLFTTKSNCDRHLLRKHGNVESAMSVYVPTEDVSEPIPVPKSVEEIELEEQRRRQAAEAEREREREREREREREREREREQERDREREREQERDREREQQQLIQQLRQQMAAAAAAAASVAAAAAVVVAAPAPAQSPPGGVVGGVLEPSSDLPYKCHLCEFSFGERLQCLEHIKQLHAHEFALLLAKGAIETDAQQQQQLPANPHSDDEAAAAAAAAGAATGATTVVRTGGKYPDYSNRKVICAFCVRRFWSTEDLRRHMRTHSGERPFQCEICLRKFTLKHSMLRHMKKHNGRSHNGGEMDHQSDCSDDEQLLLCSPPTTPTPTNNNNSNTCQNNNNTTNNNNNNNNTKQVLRELLGKTNEWRLNRGEHKENIAEAAAAAAAAATAAAAAAAAAATTPASPATTVVASGDLIGNLLGISDQGILNKLLSSPDEAAKLLGVEK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01328068;
90% Identity
-
80% Identity
-