Basic Information

Insect: Scaptomyza reducta
Gene Symbol: salm
Assembly: GCA_035044485.1
Location: JAWNNV010001303.1:2042653-2049909[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 2.3e-06 0.00016 21.9 1.7 1 23 356 378 356 378 0.98

2 8 3.2e-05 0.0022 18.3 3.5 1 23 384 406 384 406 0.98

3 8 2.2 1.5e+02 3.1 2.5 5 23 665 683 662 683 0.84

4 8 3.4e-08 2.3e-06 27.7 0.2 1 23 689 711 689 711 0.98

5 8 0.001 0.07 13.6 0.9 1 23 721 743 721 743 0.98

6 8 0.051 3.5 8.2 0.1 2 23 956 978 956 978 0.96

7 8 1.1e-05 0.00076 19.8 5.0 1 23 1118 1140 1118 1140 0.96

8 8 8.7e-08 6e-06 26.4 0.7 1 23 1146 1168 1146 1168 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	2.3e-06	0.00016	21.9	1.7	1	23	356	378	356	378	0.98
2	8	3.2e-05	0.0022	18.3	3.5	1	23	384	406	384	406	0.98
3	8	2.2	1.5e+02	3.1	2.5	5	23	665	683	662	683	0.84
4	8	3.4e-08	2.3e-06	27.7	0.2	1	23	689	711	689	711	0.98
5	8	0.001	0.07	13.6	0.9	1	23	721	743	721	743	0.98
6	8	0.051	3.5	8.2	0.1	2	23	956	978	956	978	0.96
7	8	1.1e-05	0.00076	19.8	5.0	1	23	1118	1140	1118	1140	0.96
8	8	8.7e-08	6e-06	26.4	0.7	1	23	1146	1168	1146	1168	0.98

Sequence Information

Coding Sequence: ATGTGCTCGATATTTCGTAATCGCATCAATTATCGGGGCACAGGAACGCGCAGTAGTTCCTCCAATGGAGGAGGAGGCAGCAGCGGGTCAGACCCCGCGGGAGACCCGGAAAATCTGCTCGCCAAGGAACTAAATGCGGATAGTAATAACAATTCAGCGAATGAAACAACACAGCCGGAGATGGAACTGCAACTGGACACGGAAACATCCCTGCCAGGACCTGCTGAGCAGCCTGAGAGTAGCAATGAGGCGTTGGACCTGTCCGTCATTTCGGGCAACCGTTTGCCCAACAGCGGGCATGTAGCACTAGAAGCTTTACAACATACCAAAGTGGCGGTAGCTCAATTTGCAGCGACTGCATTGGCGGGCTCCACGGATCCCACTGACCTGGCCATGGTGCAGTCGACGATCTTCAATGTACAGCGACAGCATctgatgcagctgcagctcatACAGCATCTACAGAGTCAATTGAAGCGGGCGGGTGGTGTCGTAGCTGCTCTCAGCAGGCAGGGTCAAACCTATGCTGAACCCGAAGACAACGAAGCCGAAGCCGAAGACGAAGAGGAGGGCgaggaagaagaggaagatgaggagcagcaacagacgATACCTTCCGACGAGCAGACTAGAGTAAACGGCGAGAGTGCAGGGAATGAACATGAAAGGCTGGAGGAGAGTTTAAAGACTGATGGGCGAGGTAGCTCCATGGATAGGGAAACGGCGGCAATAGCTAACGAGTGCAATAGGAGGGAGGAGAGATCTTGGCAAACCCGAGAGACTGTCAAGGAAAGGGATCGTGAGGTTGAGGCTGTAAAAAACGAACTGGGCGAAAATGAATATAAGCCATTGATGTGCGACATTAGCTCTAGTCTAGCATCCAGTATCATCACCAATCATGATCCGCCACCAGCACCCAACGAGCCCAATTGTTTGGAGATGCTGCAACGTCGTACCGAGGAGGTTTTGGACTCTGCCTCGCAGAGCTTGCATGCGGCGCAAATGCAGGAAGAGTATTCGGAGTACGCCTCAAAGGAGGCACAGAGCCGCGGTGAGATCTTCAAACATCGCTGCAAGTATTGTGGGAAGATTTTCGGCAGCTATTCTGCGCTTCAGATCCATCTGCGCTCCCACACAGGAGAGAGGCCCTTCCATTGCAATGTTTGTGGCAGTAAGTTCACTACCAAAGGCAATCTCAAGGTGCATTACCAACGCCATACGCAGATCTTCCCGCCCATGCTGTTGGCCCCAGTGGCCAATGGGGGACCCGCTGCACCCGAGCAGTTTATCCCGCTGTCGACTTTACGCCTTCCTTTTACGGCACCTCCGGTAGcaccactgccactgccaccgcCCTTAGCCCCACCCCTAGCACCACCTCTTCCACCGCCGACACCATCGAGTGCACAGCCCGATCAGTCAACGTTAGAGCAAAAACAGGAGCAACCTCTTGAAATTTCTGCTCAGCTGCAGCAGGCCGAAGACTTGACCAAGCCATCGGTTAGAGAGTTATCCCAGTCACCGGAGGAGTTGGTGAAAAACGTGCTACCCATTCAGACATCGCACTCTCTGCCCGAGCAGCCAGCTTCAGTTTCTCTTGACAAACTGGCCAAGGATAAAACGAAGGACAGTCCCAAACCAACGACTCCACCAACGCCACCAGCACCATCACCAATACCAACAACGACTTCCCGTCGAAATGGCAGCGTACGCAAGCGTCAGTCAAGTCAAGCGGGCAGTCCGCCTGGAGGAGAGGAACACCATAATGTCGAGCATCATCTAAGCAAGCTGGTACGCCGCTCTTCATCAAGCCGTGATGGTGCAACGATAGCAGCTGGACTTCCTGGCGAGTATTCACTGGCGCAGATGGAGCGCATCATCGACAAATCGTGGGAGGACCTAATTGAGATCGATAAGACATCGGAAACCTCGAAGCTGCAACAGCTGGTGGATAACATTGAGAACAAGTTGACCGATCCCAATCAGTGCATATTCTGCCAGAAGGTAATGTCGTGTCGCAGCTCCCTACAGATGCACATTCGCACACATACAGGTGAACGACCCTTTCGCTGTAAGATCTGCGGTCGAGCCTTTGCCACGAAGGGTAATCTTAAGGCACACATGAGCATTCATAAGATAAAGCCGCCGATGCGTAGTCAGTTCAAGTGTCCGGTTTGTCATCAAAAGTTCTCCAACGGGATAATCCTGCAACAGCACATACGCATCCACACCATGGATGATGGTAGTGGAGGTCATGTACAAATCCAGGGGCAGGGCGGCGATGCCGAACGTCTGGGCATTGAAGATCAGAACTCTAACAAGTCAATGGGCACTTCGGACACCCTGGACTTCTCGACGACCATCTCGGATCACTCGGGTCAACGTTCGGAGTCTTCTCAGGGCGGTGATTTCGATGAGTTCATGACCATGGACAGCACCGATGACTCGCGTGATAATTCCAGCGCAGCGACAAACACACTACTCGATAGGGACAGAGATAGACGACTGCCAATGCTCGATGATGAGCGCTCTAGATCGGATGTGGAGGGAGGAGGACGGGAAAGTGGTAGTGCTGAAATGCCTGCTATGGATCTCTCATCACCATCACCAACAGCCTCATCACTAGCGCGTCTCTTTGGCGTTGCCAGCAATAGTGGACCGGttggaacagcagcaggaggacCATCAAGCATAGCTGGTAGTTCAGCCCCCTTACCCATGCTCCATGGCATGCCGATGCCACCGAATCTGCTACTGATGGCAGCGGCCAGAGAGGAGATGCATGCGTTAGGCCAGACGCATGCCAAGTTTCCGCTGTTGCCCTTCGGACCGCTTGGATTAATggGACTGCAACCGCCTCCAAATGTGTGCAATCTCTGCTTTAAGATGCTGCCCAGTCTGGCCGCATTGGAAAGTCACCTACAGAGCGAACATGCCAAAGAAGTGACGGCTCCTTCCGTTCGAGCTCACTGCAACGATACAGTACCGCCCTACGGAGCGAAGCTCACTCTCAATCCAAATCTGTTTGCCAAGAAGCCAAAGTCATCGCTGGAGCTGGCGCCTGCGGAATCAGCGGCGCCTTTGGCGGCACCCATTAAAGAGGAGCCCGAATCTgatcaacagcatcagcagcagcaacagctggtCGATGAGGGAGAGAGTGGAGCATCAGCTGCTCCAGTTGCCTCCTCTACCAATTATCAGCATGAGGCTGCCGCTGATGCAGAACAATCCCTGATGAAGATGCAGTTGCATGCACATCGTTTTCCTGCAGGTCCTTTGGACTTTCAACAGGCATTGATGTCGGCTGGACCGCCCAGTTCCAGTTTGGATCCTCCGGTGAACAACAAGCACTTCTGCCATGTGTGTCGTCGCAATTTCAGTTCGAGTTCTGCGCTGCAGATTCACATGCGCACCCACACCGGAGATAAGCCCTTTCAGTGCAATGTGTGCCAGAAGGCCTTCACCACTAAGGGTAACCTTAAGGTTCACATGGGTACGCATATGTGGACGAATCCGACATCGCGTCGTGGTCGACGCATGTCCCTGGAGTTACCGATGCGACCAGGACCGGGTCAGGGACCGGGTAACGCACATGGGGTACCAACTGCTGAGCAGGAATTTATGCAGCGACGACCGGAACTCTTTTTCCCATATTTGCCACCCTTCTTCAATGGAATGCCACCCAAGCCAGGTGAATTAAGTCCTGGCGCTTTTGCCAACTTACCTCCACCGCATTTTGCAAATGGAACCAAGTATCCATACCCACCCGGACTTCTAGGCTTCCCTGGGTTTTTGGCTGGTGGAGCTGGTGGTGGTCATCCACAGCATCCTTACGGATTAGAGCGTGGAAATAGCAAGTCCCCCACATCGGAACCAGCGCAGAGTCCAGCGTCCCGGGAGGATGATGGAGCTATGAATAATAACATATGGCATCCGTTAAGCAATATCAAGATGGAACTCAATCAAAATGAGGGCAATCAGAGTgaacaggagcaggagctggAGCAGGAGGATAATAATAACGGAGGGATCGATGCAGATGCCGAACATGAAGCGGATGCCGATTCCCGAAGCACTGAAAAgtag
Protein Sequence: MCSIFRNRINYRGTGTRSSSSNGGGGSSGSDPAGDPENLLAKELNADSNNNSANETTQPEMELQLDTETSLPGPAEQPESSNEALDLSVISGNRLPNSGHVALEALQHTKVAVAQFAATALAGSTDPTDLAMVQSTIFNVQRQHLMQLQLIQHLQSQLKRAGGVVAALSRQGQTYAEPEDNEAEAEDEEEGEEEEEDEEQQQTIPSDEQTRVNGESAGNEHERLEESLKTDGRGSSMDRETAAIANECNRREERSWQTRETVKERDREVEAVKNELGENEYKPLMCDISSSLASSIITNHDPPPAPNEPNCLEMLQRRTEEVLDSASQSLHAAQMQEEYSEYASKEAQSRGEIFKHRCKYCGKIFGSYSALQIHLRSHTGERPFHCNVCGSKFTTKGNLKVHYQRHTQIFPPMLLAPVANGGPAAPEQFIPLSTLRLPFTAPPVAPLPLPPPLAPPLAPPLPPPTPSSAQPDQSTLEQKQEQPLEISAQLQQAEDLTKPSVRELSQSPEELVKNVLPIQTSHSLPEQPASVSLDKLAKDKTKDSPKPTTPPTPPAPSPIPTTTSRRNGSVRKRQSSQAGSPPGGEEHHNVEHHLSKLVRRSSSSRDGATIAAGLPGEYSLAQMERIIDKSWEDLIEIDKTSETSKLQQLVDNIENKLTDPNQCIFCQKVMSCRSSLQMHIRTHTGERPFRCKICGRAFATKGNLKAHMSIHKIKPPMRSQFKCPVCHQKFSNGIILQQHIRIHTMDDGSGGHVQIQGQGGDAERLGIEDQNSNKSMGTSDTLDFSTTISDHSGQRSESSQGGDFDEFMTMDSTDDSRDNSSAATNTLLDRDRDRRLPMLDDERSRSDVEGGGRESGSAEMPAMDLSSPSPTASSLARLFGVASNSGPVGTAAGGPSSIAGSSAPLPMLHGMPMPPNLLLMAAAREEMHALGQTHAKFPLLPFGPLGLMGLQPPPNVCNLCFKMLPSLAALESHLQSEHAKEVTAPSVRAHCNDTVPPYGAKLTLNPNLFAKKPKSSLELAPAESAAPLAAPIKEEPESDQQHQQQQQLVDEGESGASAAPVASSTNYQHEAAADAEQSLMKMQLHAHRFPAGPLDFQQALMSAGPPSSSLDPPVNNKHFCHVCRRNFSSSSALQIHMRTHTGDKPFQCNVCQKAFTTKGNLKVHMGTHMWTNPTSRRGRRMSLELPMRPGPGQGPGNAHGVPTAEQEFMQRRPELFFPYLPPFFNGMPPKPGELSPGAFANLPPPHFANGTKYPYPPGLLGFPGFLAGGAGGGHPQHPYGLERGNSKSPTSEPAQSPASREDDGAMNNNIWHPLSNIKMELNQNEGNQSEQEQELEQEDNNNGGIDADAEHEADADSRSTEK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01325827;
90% Identity: iTF_01321352; iTF_01328050;
80% Identity: -