Basic Information

Insect: Scaptomyza cyrtandrae
Gene Symbol: salm
Assembly: GCA_035044605.1
Location: JAWNNS010000648.1:1629509-1636678[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 2.4e-06 0.00017 21.9 1.7 1 23 360 382 360 382 0.98

2 8 3.3e-05 0.0025 18.3 3.5 1 23 388 410 388 410 0.98

3 8 2.3 1.7e+02 3.1 2.5 5 23 668 686 665 686 0.84

4 8 3.4e-08 2.5e-06 27.7 0.2 1 23 692 714 692 714 0.98

5 8 0.001 0.077 13.6 0.9 1 23 724 746 724 746 0.98

6 8 0.052 3.8 8.2 0.1 2 23 959 981 959 981 0.96

7 8 1.1e-05 0.00083 19.8 5.0 1 23 1123 1145 1123 1145 0.96

8 8 8.9e-08 6.6e-06 26.4 0.7 1 23 1151 1173 1151 1173 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	2.4e-06	0.00017	21.9	1.7	1	23	360	382	360	382	0.98
2	8	3.3e-05	0.0025	18.3	3.5	1	23	388	410	388	410	0.98
3	8	2.3	1.7e+02	3.1	2.5	5	23	668	686	665	686	0.84
4	8	3.4e-08	2.5e-06	27.7	0.2	1	23	692	714	692	714	0.98
5	8	0.001	0.077	13.6	0.9	1	23	724	746	724	746	0.98
6	8	0.052	3.8	8.2	0.1	2	23	959	981	959	981	0.96
7	8	1.1e-05	0.00083	19.8	5.0	1	23	1123	1145	1123	1145	0.96
8	8	8.9e-08	6.6e-06	26.4	0.7	1	23	1151	1173	1151	1173	0.98

Sequence Information

Coding Sequence: ATGTGCTCGATATTTCGCAATCGCATCAATTATCGGGGCACAGGAACGCGCAGTGGTTCCTCCAATGGTGGGGGAGGCAGCAGCGGGACAGACCCCGCGGGAGATCGGGATAATCTGCTCGCCAAGGAACTAAATGCGGATAGTAATAACAATTCAGCGAATGAATTAACACAGCCGGAGATGGAACTGCAATTGGAAACGGAAACATCCCTGCCAGGGCCTGCTGAGCAGCCTGAGAGTAGCAATGAGGCGCTGGACCTGTCCGTCATTTCGGGCAACCGTTTACCCAACAGCGGGCATGTGGCACTAGAAGCTTTACAACATACCAAAGTGGCGGTAGCTCAATTTGCAGCGACTGCGTTGGCGGGCTCCACAGATCCCACGGATCTGGCCTTGGTGCAGTCGACGATCTTCAATGTGCAGCGACAGCATCTgatgcagctgcagctcaTTCAGCATCTACAGAGTCAATTGAAGCGGGCGGGTGGTGTGGTAGCTGCTCTTAGCAGGCAGGGTCAAGCTTATGCGGAACCCGAAGACAATGAAgccgaagaggaggaggaggagggcGAGGGCGAGGGCGAGggagaagaagaggaagaggaggagcaGCAACCGACGATACCTTCCGAAGAGAAGAGGAGAGTAAACGGCGATAGTGCAGGGAACGAACATGAAAGGCTGGAGGAGAGTTTAAAGACTGATGGACGGGATAACTCCATGGATAGGGAAATGACGGCAATATCTAACGAGTGCAATAGGAGGGAGAAGAGATCTTGGCAAACCCGAGAGACTGTCAAGGAAAGGGATCGTGAGATTGAGGCTGTGGAAAACGAACTGGGCGAAAGTGAATATAAGCCATTGATGTGCGACATTAGCTCTAGTCTGGCATCCAGTATCATCACCAATCATGATCCGCCACCAGCACCCAACGAGCCCAATTGTTTGGAGATGCTGCAACGTCGTACCGAGGAGGTACTGGACTCTGCCTCGCAAAGCTTGCATGCGGCGCAAATGCAGGAAGAGTATTCGGAGTACGCCTCAAAGGAGGCGCAGAGCCGCGGTGAGATCTTCAAACATCGCTGCAAGTATTGTGGGAAGATATTCGGCAGCTATTCTGCGCTTCAGATCCATCTGCGCTCCCACACAGGAGAGAGGCCCTTCCATTGCAATGTTTGTGGCAGCAAGTTCACTACCAAAGGCAATCTTAAGGTGCATTACCAACGTCACACGCAGATCTTCCCGCCCATGCTGTTGGCCCCCGTGGCCAATGGGGGGCCCGGTGCACCCGAGCAGTTTATCCCCCTGTCGACTTTACGCCTTCCGTTTGCGGCACCACCGGTAGCACCGTTGGCACCGCCCTTAGCCCCACCCCTAGCACCACctccgccaccgccgccatcATCGAGTGCACAGCCCGATCAGTCAACGTTAGATCAAAAAATGGAGAAACCTCTTGAAATTCCTGGTCAGTTACAGCAGGCCGAAGACTTGAGCAAGCCTTCCGTTAGAGAGTTGGCCCAGTCACCAGAGGAGTCGGTGAAAAACGTGTTACCCGTTCAGACATCCAACTCTCTGCCCGAGCAGCCAGCATTAGTTTCTCATGAAAAACTGGCAAAGGATAAAACGAAGGATAGTCCCAAGCCAACGACTCCACCAACGCCACCAGCACCatcaccaacaccaacaacgacAGCCCGTCGCAATGGAAGCGTACGCAAGCGTCAGACAAGTCAAGCGGGCAGTCCGCCTGGAGGAGaggaacaacaacataatGTCGAACATCATCCAAGTAAGCTGGTGCGTCGCTCTTCATCGAGCCGTGATAGTGCAATGATAACAGCTGGACTACCTGGCGAGTATTCACTGGCGCAAATGGAGCGCATCATTGACAAATCGTGGGAGGACCTAATTGAGATCGATAAGACGTCGGAAACCTCGAAACTGCAACAGCTGGTGGATAACATTGAGAACAAGTTGACCGATCCCAATCAGTGCATATTCTGCCAGAAGGTAATGTCGTGTCGTAGCTCCCTACAGATGCacattcgcacacacacaggtgAACGACCCTTTCGCTGTAAGATCTGCGGTCGAGCCTTTGCTACCAAGGGTAATCTTAAGGCACACATGAGCATTCATAAGATAAAGCCGCCGATGCGTAGTCAGTTCAAGTGTCCGGTTTGTCATCAAAAGTTTTCCAACGGGATAATCCTGCAACAGCACATACGCATCCATACCATGGATGATGGTAGTGGAGGTCATGGACAAATCCAGGGGCAGGGTGGCGATGCCGAACGTCTGGGCATTGAAGATCAGAACTCTAACAAGTCAATGGGCACTTCCGACACCCTGGACTTCTCGACGACCATCTCGGATCATTCGGGTCAACGTTCGGAGTCTTCTCAGGGCGGTGATTTCGATGAGTTCATGACCATGGACAGCACCGATGACTCGCGTGATAATTCCAGCGCAGCGACAAACACACTGCTCGATAGGGACAGAGATAGACGACTGCCTATGCTCGATGATGAGCGCTCTAGATCGGATGTGGAGGGAGGAGGACGGGAAAGCGCTAGTGCCGAAATGCCTGCAATGGATCTCTCATCACCATCACCAACAGCCTCATCACTAGCGCGTCTCTTTGGCGTTGGCAACAATAGTGGACCGGGtggaacagcagcaggaggacCATCAAGCATAGCTGGTAGTTCAGCCTCCTTACCCATGCTCCATGGCATGCCGATGCCACCGAATCTGCTACTGATGGCAGCGGCCAGAGAAGAGATGCATGCGTTAGGCCAGACGCATGCCAAGTTTCCGCTGTTGCCCTTCGGACCGCTTGGATTAATGGGACTGCAACCGCCTCCAAATGTGTGCAATCTCTGCTTTAAGATGCTGCCCAGTCTGGCCGCCTTGGAAAGTCACCTACAAAGCGAACATGCCAAAGAAGTGACGGCTCCTTCCGTTCGAGCCCACTGCAACGATACTGTAACACCATATGGAGCAAAGCTCACTCTCAATCCAAATCTGTTTGCCAAGAAGCCAAAGTCGACGCTGGAGCTGGCGCCTGCGGAATCAGCGGCGCCTTTGGCGGCACCCATTAAAGAGGAGCCCGAAACTgatcaacagcatcagcagcagcagcagctgctcgATGAGGGTGGCTGCGAGAGTGGAGCATCAGCTGCTTCAGTTGGCTCCTCTACCAATTATCAGCATGAGGCTGCCGCTGATGCAGAACAATCCCTGATGAAGATGCAGTTGCATGCACATCGTTTTCCTGCGGGTCCTTTGGACTTTCAACAGGCATTGATGTCGGCTGGACCGCCCAGTTCCAGTTTGGATCCTCCGGTTAACAACAAGCACTTCTGTCATGTGTGTCGTCGCAATTTTAGTTCGAGTTCTGCGCTGCAGATTCACATGCGCACCCATACCGGAGATAAGCCCTTTCAGTGCAATGTGTGCCAGAAGGCGTTCACCACTAAGGGTAACCTTAAGGTTCACATGGGTACGCATATGTGGACGAATCCGACATCGCGTCGTGGTCGACGCATGTCCCTGGAGTTGCCGATGCGACCAGGACCGGGTCAGGGACCGGGTAACGCGCATGGGGTACCAACTGCTGAGCAGGAATTCATGCAGCGACGACCGGAACTCTTTTTCCCGTATTTGCCACCCTTCTTCAATGGAATGCCACCCAAGCCTGGTGAACTAAGTCCTGGCGCTTTTGCCAACTTACATCCACCGCATTTTGCAAATGGAACCAAATATCCATATCCACCCGGTCTTCTAGGCTTCCCTGGGTTTTTgagtggtggcggtggtggtcaTCTCCAACATCCTTACGTATTGGAGCGAGGAAATAGCAAATCCCCCACATCGGAACCAGCGCAGAGTCCTGCATCTCGTGAGGATGACGGAGCTATGAATAATAACATATGGCATCCGTTAAGCACCATCAAGATGgaaaacaatcaaaatgaGGGCAATCAAAGTGAACCGGAACAGGAgctggagcaggagcaggaggatAATAATAATGGAGGAATCGATGCAGATGCCGAAGCGGATGTCGAGTCTCGAAGCACTGAAAAGTAG
Protein Sequence: MCSIFRNRINYRGTGTRSGSSNGGGGSSGTDPAGDRDNLLAKELNADSNNNSANELTQPEMELQLETETSLPGPAEQPESSNEALDLSVISGNRLPNSGHVALEALQHTKVAVAQFAATALAGSTDPTDLALVQSTIFNVQRQHLMQLQLIQHLQSQLKRAGGVVAALSRQGQAYAEPEDNEAEEEEEEGEGEGEGEEEEEEEQQPTIPSEEKRRVNGDSAGNEHERLEESLKTDGRDNSMDREMTAISNECNRREKRSWQTRETVKERDREIEAVENELGESEYKPLMCDISSSLASSIITNHDPPPAPNEPNCLEMLQRRTEEVLDSASQSLHAAQMQEEYSEYASKEAQSRGEIFKHRCKYCGKIFGSYSALQIHLRSHTGERPFHCNVCGSKFTTKGNLKVHYQRHTQIFPPMLLAPVANGGPGAPEQFIPLSTLRLPFAAPPVAPLAPPLAPPLAPPPPPPPSSSAQPDQSTLDQKMEKPLEIPGQLQQAEDLSKPSVRELAQSPEESVKNVLPVQTSNSLPEQPALVSHEKLAKDKTKDSPKPTTPPTPPAPSPTPTTTARRNGSVRKRQTSQAGSPPGGEEQQHNVEHHPSKLVRRSSSSRDSAMITAGLPGEYSLAQMERIIDKSWEDLIEIDKTSETSKLQQLVDNIENKLTDPNQCIFCQKVMSCRSSLQMHIRTHTGERPFRCKICGRAFATKGNLKAHMSIHKIKPPMRSQFKCPVCHQKFSNGIILQQHIRIHTMDDGSGGHGQIQGQGGDAERLGIEDQNSNKSMGTSDTLDFSTTISDHSGQRSESSQGGDFDEFMTMDSTDDSRDNSSAATNTLLDRDRDRRLPMLDDERSRSDVEGGGRESASAEMPAMDLSSPSPTASSLARLFGVGNNSGPGGTAAGGPSSIAGSSASLPMLHGMPMPPNLLLMAAAREEMHALGQTHAKFPLLPFGPLGLMGLQPPPNVCNLCFKMLPSLAALESHLQSEHAKEVTAPSVRAHCNDTVTPYGAKLTLNPNLFAKKPKSTLELAPAESAAPLAAPIKEEPETDQQHQQQQQLLDEGGCESGASAASVGSSTNYQHEAAADAEQSLMKMQLHAHRFPAGPLDFQQALMSAGPPSSSLDPPVNNKHFCHVCRRNFSSSSALQIHMRTHTGDKPFQCNVCQKAFTTKGNLKVHMGTHMWTNPTSRRGRRMSLELPMRPGPGQGPGNAHGVPTAEQEFMQRRPELFFPYLPPFFNGMPPKPGELSPGAFANLHPPHFANGTKYPYPPGLLGFPGFLSGGGGGHLQHPYVLERGNSKSPTSEPAQSPASREDDGAMNNNIWHPLSTIKMENNQNEGNQSEPEQELEQEQEDNNNGGIDADAEADVESRSTEK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01325827;
90% Identity: iTF_01327328;
80% Identity: -