Basic Information

Insect: Scaptomyza reducta
Gene Symbol: -
Assembly: GCA_035044485.1
Location: JAWNNV010000045.1:237969-244587[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 2.4e-05 0.0016 18.7 2.1 1 23 268 290 268 290 0.97

2 18 7.8e-06 0.00054 20.2 0.4 1 23 296 318 296 318 0.97

3 18 0.0011 0.079 13.4 0.9 1 23 324 346 324 346 0.95

4 18 1.6e-05 0.0011 19.2 3.1 1 23 352 374 352 374 0.97

5 18 3.7e-05 0.0026 18.1 4.7 1 23 380 402 380 402 0.99

6 18 6.8e-05 0.0047 17.3 5.7 1 23 408 430 408 430 0.97

7 18 3.3e-07 2.3e-05 24.5 4.3 1 23 436 458 436 458 0.98

8 18 1.2e-07 8.3e-06 25.9 2.4 1 23 464 486 464 486 0.97

9 18 7e-05 0.0048 17.2 6.7 1 23 493 515 493 515 0.97

10 18 0.00012 0.0084 16.5 6.5 1 23 521 543 521 543 0.98

11 18 1.1e-05 0.00075 19.8 4.5 1 23 549 571 549 571 0.98

12 18 7.9e-06 0.00054 20.2 8.1 1 23 577 599 577 599 0.98

13 18 3.3e-05 0.0023 18.2 7.8 1 23 605 627 605 627 0.97

14 18 7.2e-07 4.9e-05 23.5 7.7 1 23 633 655 633 655 0.98

15 18 0.00022 0.015 15.6 9.5 1 23 661 684 661 684 0.95

16 18 7.9e-05 0.0055 17.1 0.9 1 23 690 712 690 712 0.98

17 18 0.0013 0.093 13.2 4.4 1 23 722 744 722 744 0.98

18 18 9.9e-06 0.00068 19.9 1.6 1 23 750 773 750 773 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	2.4e-05	0.0016	18.7	2.1	1	23	268	290	268	290	0.97
2	18	7.8e-06	0.00054	20.2	0.4	1	23	296	318	296	318	0.97
3	18	0.0011	0.079	13.4	0.9	1	23	324	346	324	346	0.95
4	18	1.6e-05	0.0011	19.2	3.1	1	23	352	374	352	374	0.97
5	18	3.7e-05	0.0026	18.1	4.7	1	23	380	402	380	402	0.99
6	18	6.8e-05	0.0047	17.3	5.7	1	23	408	430	408	430	0.97
7	18	3.3e-07	2.3e-05	24.5	4.3	1	23	436	458	436	458	0.98
8	18	1.2e-07	8.3e-06	25.9	2.4	1	23	464	486	464	486	0.97
9	18	7e-05	0.0048	17.2	6.7	1	23	493	515	493	515	0.97
10	18	0.00012	0.0084	16.5	6.5	1	23	521	543	521	543	0.98
11	18	1.1e-05	0.00075	19.8	4.5	1	23	549	571	549	571	0.98
12	18	7.9e-06	0.00054	20.2	8.1	1	23	577	599	577	599	0.98
13	18	3.3e-05	0.0023	18.2	7.8	1	23	605	627	605	627	0.97
14	18	7.2e-07	4.9e-05	23.5	7.7	1	23	633	655	633	655	0.98
15	18	0.00022	0.015	15.6	9.5	1	23	661	684	661	684	0.95
16	18	7.9e-05	0.0055	17.1	0.9	1	23	690	712	690	712	0.98
17	18	0.0013	0.093	13.2	4.4	1	23	722	744	722	744	0.98
18	18	9.9e-06	0.00068	19.9	1.6	1	23	750	773	750	773	0.96

Sequence Information

Coding Sequence: ATGCAGCACGTGAGCGCTGCCAGTTCGGCACCTTCGGTGGTTTCAGCACCGGTGGTGACCACTGGCGGTGGCACCACCATCACCTTGGGCGGACCGCCGCCCCCATCACTAGCAAGTGGCAAACATTCGTCGGAACATCATCATAAAGAGGACGGCAATAAGCCGCCGCATCACGGCATTGAAATGTATAAAGTAAACATTGAGGATATTTCACAGTTATTTACGTATCACGAGGTCTTTGGCAAAATCCATGGCGATGTGGTTAATCATGTGGCGGCGGTGCATGGCAGCCAGCTGCCACCACCGCAGCTGCCACCGCCGCCCCCCCTACCGCCACAGACGACGCATTCGGCTAGCGCGGCTGCAGCCGCAGCGGCGGCGTCTCAAAATAATGCAGCCGTTGCTGCTGTAATGGCTTCGGCTAATGCAGCAGCCGCGGCTGCAGCGGCCGCCTCAGCAGCGGCatcagcacaacaacaacagcaacagcagcagcagcagcagcaacaacagcagcagcagcagcaacaacagcaacaacaacagcagcagcagcaacaacagcagcagcagcaacaacagcagcagccagcaacaaGCACTAATGCTGGAAGTCAGCAGGGTAGCGCCACGGtgaccaccaccagcagctcTGGGGGCAGCAATAACGGGGGCAATAACAActcaacgacgacgacgggtGAGTTGCTAATGCCAAAAATGGAGGGCGGCATCCATGGCGTCGATGGTCAGTCGAGTGTTGCATTGGCGCCGGATGGCACACCGATTGCGACTGGTACGCATGTGTGCGACATTTGTGGCAAGATGTTTCAGTTTCGCTATCAGCTGATTGTGCACCGCCGCTACCACAGCGAGCGCAAGCCGTTCATGTGTCAGGTGTGCGGTCAGGGTTTTACCACATCGCAGGATTTGACCCGTCATGGCAAGATACACATTGGCGGCCCAATGTTCACATGCATTGTGTGCTTCAATGTGTTTGCCAACAATACAAGCTTGGAGCGCCATATGAAACGGCATTCAACGGACAAGCCATTCGCCTGCACCATTTGCCAAAAGACTTTCGCACGCAAAGAGCATCTGGACAATCATTTTCGTTCGCATACGGGCGAAACGCCGTTCCGTTGCCAATACTGCGCCAAGACGTTTACGCGCAAGGAGCACATGGTTAATCATGTGCGCAAACACACGGGTGAGACGCCACATCGTTGCGATATTTGTAAGAAGTCCTTCACGCGCAAGGAACACTATGTTAACCACTACATGTGGCACACTGgTCAAACTCCGCATCAGTGCGATGTCTGCGGCAAGAAATATACGCGCAAGGAGCACCTAGCCAACCATATGCGCTCCCACACAAACGAGACGCCGTTCCGTTGCGAAATCTGCGGCAAGAGCTTTAGCCGCAAGGAGCACTTCACCAATCACATACTCTGGCATACAGCAGGCGAGACGCCGCATCGGTGCGACTTCTGCTCCAAGACGTTTACGCGCAAGGAACATTTGTTAAACCACGTGCGCCAGCACACTGGAGAGTCACCGCATCGCTGCTCCTACTGCATGAAGACGTTCACACGCAAGGAGCATCTGGTGAATCATATACGCCAGCACACGGGTGAGACACCGTTCAAGTGCACGTACTGCACGAAAGCGTTCACACGCAAAGATCACATGGTTAATCATGTACGGCAACATACAGGCGAATCGCCGCACAAGTGCACATATTGCACGAAGACGTTCACGCGCAAGGAGCATCTAACGAATCATGTGCGACAGCACACGGGCGATTCGCCACATCGCTGTAGCTTCTGCAAGAAGACCTTCACCCGCAAGGAGCATCTGACGAATCATGTGCGCCTGCATACGGGAGACTCGCCGCACAAATGCGAATACTGTCAGAAGACGTTCACGCGCAAGGAGCATCTCAATAATCATATGCGCCAGCACTCGAGCGACAATCCGCATTGTTGCAACGTGTGCAACAAGCCGTTCACACGCAAGGAGCATCTGATTAATCATATGTCACGCTGTCACACTGGTGATCGACCCTTCACCTGTGAGACATGCGGCAAATCCTTTCCCCTCAAGGGCAATCTGTTGTTCCATCAGCGCAGCCACACCAAGGGTCAGGAGTGCGAGCGTCCATTTAACTGCGAGAAATGTCCCAAGAATTTCATATGCAAAGGTCACTTGGTCTCGCACATGCGCTCCCATTCGGGTGAGAAGCCGCACGCGTGCACACTGTGTAGCAAGGCTTTCGTCGAGCGCGGCAATTTAAAGCGCCACATGAAGATGAATCATCCGGATGCTATGATGCCGCCACCACCCGTGCATCCGCATCCACAAATACCGGCTGGTGTGCTGACCCAAGTCAAGCAGGAAGTGAAACCGATCATAATTCCACATCACTCGGCGACGACCACGATGCACACCATCCAGCAGATAACAGCgggcgcagcagcagctggcgccGGTGCCGTCCAGCTAGCGCCAGGACTGGTACCTCTGGTCACCAGTTCGCTCATCTCGCACAATGCCCAGtcgcagaagcagcaacaggcggcagcagcagttgccgcccagcagcaagcagcagcagcagctgctgcccaACAGCAGGCcgccgcagcggcagcagcgcaacagcaagcagcggctgctgcagcagcagcggcccatcaacagcatcagcatcaggtggccgcacagcagcaacaacagcagcagcaacaggcagcagttgctgcacatcagcagcagcaacagcaattgcagcagcaacagttgctgcagctgtccatacagcaggccgcacatcatcatcaacagcatcagcagcagcagcaacaacaacagcaacaacaacagcagcagcagcaacatcatcaacagcagcagcagcaacaacaatcgcattCACAGGCAccgccacagcagcaacaacaacagcaacagccgccaCCGCAGGTGCCAATTGCATTGATAAGTGATCCAAGTGCGTTGGCACGTGCCGCcatgcagctgcaacatctGCCCACAAATGTCGAACAACATCCGGTGGTTTACTAA
Protein Sequence: MQHVSAASSAPSVVSAPVVTTGGGTTITLGGPPPPSLASGKHSSEHHHKEDGNKPPHHGIEMYKVNIEDISQLFTYHEVFGKIHGDVVNHVAAVHGSQLPPPQLPPPPPLPPQTTHSASAAAAAAAASQNNAAVAAVMASANAAAAAAAAASAAASAQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQPATSTNAGSQQGSATVTTTSSSGGSNNGGNNNSTTTTGELLMPKMEGGIHGVDGQSSVALAPDGTPIATGTHVCDICGKMFQFRYQLIVHRRYHSERKPFMCQVCGQGFTTSQDLTRHGKIHIGGPMFTCIVCFNVFANNTSLERHMKRHSTDKPFACTICQKTFARKEHLDNHFRSHTGETPFRCQYCAKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHYVNHYMWHTGQTPHQCDVCGKKYTRKEHLANHMRSHTNETPFRCEICGKSFSRKEHFTNHILWHTAGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCSYCMKTFTRKEHLVNHIRQHTGETPFKCTYCTKAFTRKDHMVNHVRQHTGESPHKCTYCTKTFTRKEHLTNHVRQHTGDSPHRCSFCKKTFTRKEHLTNHVRLHTGDSPHKCEYCQKTFTRKEHLNNHMRQHSSDNPHCCNVCNKPFTRKEHLINHMSRCHTGDRPFTCETCGKSFPLKGNLLFHQRSHTKGQECERPFNCEKCPKNFICKGHLVSHMRSHSGEKPHACTLCSKAFVERGNLKRHMKMNHPDAMMPPPPVHPHPQIPAGVLTQVKQEVKPIIIPHHSATTTMHTIQQITAGAAAAGAGAVQLAPGLVPLVTSSLISHNAQSQKQQQAAAAVAAQQQAAAAAAAQQQAAAAAAAQQQAAAAAAAAAHQQHQHQVAAQQQQQQQQQAAVAAHQQQQQQLQQQQLLQLSIQQAAHHHQQHQQQQQQQQQQQQQQQQHHQQQQQQQQSHSQAPPQQQQQQQQPPPQVPIALISDPSALARAAMQLQHLPTNVEQHPVVY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00560429;
90% Identity: iTF_00560429;
80% Identity: -