Sred013659.1
Basic Information
- Insect
- Scaptomyza reducta
- Gene Symbol
- ftz-f1
- Assembly
- GCA_035044485.1
- Location
- JAWNNV010001272.1:120891-126024[-]
Transcription Factor Domain
- TF Family
- SF-like
- Domain
- zf-C4|SF-like
- PFAM
- AnimalTFDB
- TF Group
- Zinc-Coordinating Group
- Description
- The ligand binding domain of nuclear receptor steroidogenic factor 1 (SF-1): SF-1, a member of the nuclear hormone receptor superfamily, is an essential regulator of endocrine development and function and is considered a master regulator of reproduction. Most nuclear receptors function as homodimer or heterodimers, however SF-1 binds to its target genes as a monomer, recognizing the variations of the DNA sequence motif, T/CCA AGGTCA. SF-1 functions cooperatively with other transcription factors to modulate gene expression. Phospholipids have been determined as potential ligands of SF-1. Like other members of the nuclear receptor (NR) superfamily of ligand-activated transcription factors, SF-1 has a central well conserved DNA binding domain (DBD), a variable N-terminal domain, a flexible hinge and a C-terminal ligand binding domain (LBD). [1, 8, 3, 11, 6, 5, 12, 10, 9, 2, 4, 7]
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.1e-86 1.9e-82 277.9 0.8 7 408 1 416 1 418 0.82
Sequence Information
- Coding Sequence
- ATGCGCGGCGGTCGCAATAAGTTTGGACCCATGTACAAAAGAGATCGGGCGCGAAAACTGCAAGTGATGCGTCAGCGTCAGCTGGCGCTGCAGGCGCTTCGCAGCTCGATGGGCACAGACATAAAGCCGACCCCGCTCTCGCCGGGCTATCAGCAAGCATatccaaatatgaatattaagcAAGAAATTCAAATACCTCAGGTATCCTCACTCACACAATCGCCAGACTCATCACCCAGCCCCATCGCTATTGCTTTAGGTCAGGTAAATGCAAATGTGATAGCCACACCGATGAGTACCAGCAATTTAAGTGGAAACGGCAATGGCAGCGGAAGCGGAGGAGGTGGTGGTGAAGCAAGCACCAATGTcagtggtggcggtggcatcAACAACGTCGATGGGTGCCAACGCAGcggaaacagcagcaacagtaacagctgCCACGAAATCGCCACTGGATCTTTACATAACACAGCCGAATCGAAATTATGTTTCGATTCTGGCACGCATCCATCGAGCACAGCTGACGCGCTAATTGAGCCACTGAGGGTTTCACCAATGATACGCGAGTTTGTGCAATCGATTGATGATCGGGAATGGCAAACCCAACTTTTTGCGCTGCTGCAGAAACAAACGTACAATCAGGTTGAAGTGGATCTCTTTGAGTTAATGTGCAAAGTGCTTGATCAGAATCTGTTTTCACAAGTGGATTGGGCAAGAAACACCGTTTTCTTTAAGGATTTAAAGGTGGATGATCAAATGAAACTGCTTCAGCATTCCTGGTCCGATATGCTGGTGCTGGACCATCTTCACCACCGTATTCACAATGGTCTGCCCGATGAAACACAGCTGAATAACGGCCAGGTCTTTAATTTAATGAGTCTTGGCCTACTAGGCGTGCCACAGCTGGGCGACTACTTTAACGAACTACAGAACAAATTGCAGGAACTTAAGTTCGATATGGGAGACTATGTATGCATGAAATTTCTAATACTGCTTAATCCAGATGTGCGTGGCATTGTGAACAAGAAAACCGTTTTGGAGGGCCATGAAAATGTACAGGCCGCGCTACTGGATTACACGCTAACATGTTATCCTTCAGTTAATGACAAATTCAGGAGACTATTGAACATCCTTCCGGAAATTCACGCAATGGCAGCACGTGGAGAGGAACACCTATACTCTAAGCATTGTGCTGGTAGTGCCCCTACGCAAACTCTGCTTATGGAGATGCTGCACGCGAAGCGAAAAGTGTAA
- Protein Sequence
- MRGGRNKFGPMYKRDRARKLQVMRQRQLALQALRSSMGTDIKPTPLSPGYQQAYPNMNIKQEIQIPQVSSLTQSPDSSPSPIAIALGQVNANVIATPMSTSNLSGNGNGSGSGGGGGEASTNVSGGGGINNVDGCQRSGNSSNSNSCHEIATGSLHNTAESKLCFDSGTHPSSTADALIEPLRVSPMIREFVQSIDDREWQTQLFALLQKQTYNQVEVDLFELMCKVLDQNLFSQVDWARNTVFFKDLKVDDQMKLLQHSWSDMLVLDHLHHRIHNGLPDETQLNNGQVFNLMSLGLLGVPQLGDYFNELQNKLQELKFDMGDYVCMKFLILLNPDVRGIVNKKTVLEGHENVQAALLDYTLTCYPSVNDKFRRLLNILPEIHAMAARGEEHLYSKHCAGSAPTQTLLMEMLHAKRKV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01327219; iTF_01322677; iTF_01322706; iTF_01327925; iTF_01327950;
- 90% Identity
- iTF_01327925;
- 80% Identity
- iTF_01327219;