Basic Information

Insect: Scaptomyza polygonia
Gene Symbol: -
Assembly: GCA_035044585.1
Location: JAWNNU010001241.1:188963-192131[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 7.8e-06 0.00085 20.2 4.7 1 23 171 194 171 194 0.96

2 16 0.00057 0.062 14.4 3.3 1 23 245 268 245 268 0.97

3 16 0.00081 0.088 13.9 2.8 1 23 333 356 333 356 0.94

4 16 0.006 0.66 11.1 0.6 2 23 406 427 405 427 0.96

5 16 0.76 82 4.5 0.9 1 21 540 560 540 561 0.88

6 16 0.025 2.7 9.2 0.6 1 23 570 592 570 592 0.93

7 16 0.00051 0.055 14.5 2.2 1 23 599 621 599 622 0.95

8 16 0.00044 0.047 14.7 1.4 2 23 630 651 629 651 0.96

9 16 0.0095 1 10.5 0.1 2 21 678 697 677 701 0.88

10 16 0.35 38 5.6 0.8 1 23 739 762 739 762 0.95

11 16 0.25 27 6.0 3.2 1 22 769 790 769 790 0.96

12 16 0.0022 0.24 12.5 0.6 1 23 799 822 799 822 0.97

13 16 1.6e-05 0.0017 19.3 0.5 1 23 841 864 841 864 0.97

14 16 0.094 10 7.4 0.2 1 23 874 896 874 896 0.94

15 16 2.4e-05 0.0026 18.7 3.3 1 23 902 924 902 924 0.99

16 16 5e-05 0.0054 17.7 0.9 1 23 930 952 930 952 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	7.8e-06	0.00085	20.2	4.7	1	23	171	194	171	194	0.96
2	16	0.00057	0.062	14.4	3.3	1	23	245	268	245	268	0.97
3	16	0.00081	0.088	13.9	2.8	1	23	333	356	333	356	0.94
4	16	0.006	0.66	11.1	0.6	2	23	406	427	405	427	0.96
5	16	0.76	82	4.5	0.9	1	21	540	560	540	561	0.88
6	16	0.025	2.7	9.2	0.6	1	23	570	592	570	592	0.93
7	16	0.00051	0.055	14.5	2.2	1	23	599	621	599	622	0.95
8	16	0.00044	0.047	14.7	1.4	2	23	630	651	629	651	0.96
9	16	0.0095	1	10.5	0.1	2	21	678	697	677	701	0.88
10	16	0.35	38	5.6	0.8	1	23	739	762	739	762	0.95
11	16	0.25	27	6.0	3.2	1	22	769	790	769	790	0.96
12	16	0.0022	0.24	12.5	0.6	1	23	799	822	799	822	0.97
13	16	1.6e-05	0.0017	19.3	0.5	1	23	841	864	841	864	0.97
14	16	0.094	10	7.4	0.2	1	23	874	896	874	896	0.94
15	16	2.4e-05	0.0026	18.7	3.3	1	23	902	924	902	924	0.99
16	16	5e-05	0.0054	17.7	0.9	1	23	930	952	930	952	0.98

Sequence Information

Coding Sequence: ATGGCTAGAACGTGTAGAGTCTGTGGCGGCGCAGATGGCTTCTTTTGGATCGATACGCCTACAGATAAATATGcgccaaaaacatttaatcaACTGGTACTGGAGCTAACTAAACTCGAGgttGCTTTAGATAAATCTGACAAGTTGCCGCCCTGGATTTGCCGCAACTGTGTACATAAAGTGGAAAATGCCTACGACTTTGTGCTGCAAGCGCGCAAAAATTACAAGCTTTGGCTGCAGAAACTGGCAGTTAAACAGTTATTGGAGGACACCGAAACAGCAACTTTGGAGTGTTTGCAAGAAGCGCCCATACAATTGCTGGAAATAGAGGGCGTCACAATTAAAATGGAAGAACCAACAGAAACAGCAGTACCACAATCAGATTCAACGAGCTCAATCGATCCTCTGATTAAGAAGGACCGTACGGAAGATGGCAGCGACAGCGATTCTGAAGACGATGATGTGCCACTCCAGCAGCGCCAAATTGCctacaaaaaactgcatgtcATGCACCAGTGCAATAAATGCGACAAAACCTTCAGATATGTTTCAAACCTCTTTAGGCACAAGAGAGAAGATCACAGTTCAGAGCATAGTCAAACCAAAGAGCAAGCTGgcgaaaagaaaacaaagccTTATGGCGTGAAACCgttttttcacaatttaatCAAGAGCTCTATTGCAGCACAAAGCAGCGCAGCAGACAATGACAGTGAATCAGAGGATAGCTACTACAAATGCGATCAATGCGACAAATCCTACAAGTACATAGTGCTGCTAATCAAACATAAGCACACGACTCACGTTTCCAGCCAGtggccaacaaaaacaaaaccaattagAAGAAGCGGATCAAGTGCAGAACAGACATTGAATCAAGGATTACCGCGACAGCGTTTAAAACCACCCAGTACTGATTCTCTGGTACACAGCATTATCAAAGAGATTAACTTGCCTGATGAGATCGAGGAAGATAACTCGAGTACAGACAATTACTACAAGTGCGACCAGTGCGATAAGTCTTACAAGTACATTGTGAGTCTCATCAAGCACAAGCATAACGAGCACAAAGAGTACAATGATTCTGATGAGGACGAAGCAACGCCTTCCAGATACGCAGCAGATGCATCTACCATATCCAAGCCTTCGCGCATTGATCGCCGCGTCAAGGGATTTGATTTGCATCGCTGTAAGCCGAATGGATCCAAGGAAATTCAATGCATGATCTGTCTGCGCAGATTCATCAAATTACGACAGCTGCGCGAGCATTTGAAAGCACATCCCAAAGACTTCACATTTGAGGCTCACGGCGAGCCGATTGAACGCATTGCCGAGGGATTCTATAAGACAGCCGTGGAATCCACGTTTGCAGGCCTAAAGCGACGCATATTCAACGATCTCAAAGTGGGCATGCTTGGGCGCTACTATTCCATTACCAATGAGGCGCGCTACGAGATGAATTTGGACAGCTCGGATACTGACAGCGACGGTGAAGCAGATGTTGTGGAACGAAACTCATATGCCTGCGAACTGTGTGACTCCCCTGATGCCGTGTGGCCACGCAAATATCAGTTGCACGAGCATCATCGACAGCAGCATACCTGGCTGGAGGCGCCGCATGTCTGTCAGCGCTGTGATGCACGTTTCCTCAGCGCTCAGCTGCTCGAACATCATACACAGAAACTCTGCCAGAACACACTAAAGCGTTTTATGTGCGATAAGTGTCCACAGCGATTCTTTTGGCGCCGTAATCTACGTGCGCATCTCGTGGATCACAAAACCAAGCAAGAGACATACGCATGTGATCAGTGTTCGCGCAGTTTTCAGGATAAGAGCGCTGTGACTAAGCACAAGCTAATGCATCATGATGTTGGCAACGAGCTATTACCTTGCCGTTGGTGCACACGTACATTTTACCGTCCGGCGCTGCTGCACAAGCATGTGCAGCGTCATGGCTTTAGTGGTGGAGACCTACCACTGGCCGAGACACTGCTCGCAGATGCTGCCAAGCCATCGGGAACTAAAACGATCGTCTGTAAGCTATGCGACATGCAGTTCGTTAGCATTGGCGATTTGAGGCGACACAACTTGATGCTGGCGCACAGTGCTGAGGTATCAAACTATATGATAAGCACACAGGAGGGATTTGAGCTGCAATTGGATGAAACGGATGAGAGTGATGAGGAACCCACGAGTACAGTAGCTAATCGAACTTATAAATGCGATTTGTGTGCGATGAGCTTTCTGCGCAGGCGTGACATGAGCGAACATCAGTATTCGTTGCACACTTTTGACAAGCTGCCACATTCCTGCAAtcattgcatttttaaaacaGTTGATAAGAGCATGTTGGAGCACCATCTACGCACACAATGTCTCAACGAGGAGAAAAAATTCAAGTGCTCGCGTTGTGGCTACAAATTTATGTGGCCTGAAAGTCTAGAACAACACATGAGCAGTCAACATCCGAAATCATCTAGTCAGATGGCGGTTGCCACAAAGCGCAGCAGACGTTATCGTTATCAGTGTCCGCACTGCTGGCGCTCGTTTGTGGTGCAGCCCAGCCTAGATAAACACATACGTGACATGCATGTCGCTAAAAAGAATCCTGGTAAGAAGTATCTTTGCTCGCTGTGCGGTTTAGAGTCGTTGACGCCCAACAAGCTCAGTATACACATGCGGCGTCACAACGGCGAAAAGCCATTCAAATGTGATCTCTGCGATATGTCCTTTACTGTGCACTACGAGCTGAAGGTACATCGTCGCAAGCACACGGGCGAGCGACCCTATCAGTGTACTTTTTGTGCCAAGGATTTCGCTCGGCCGGATAAGCTAAGACGGCATGTTTACATGCACAGCGTTAAgcgataa
Protein Sequence: MARTCRVCGGADGFFWIDTPTDKYAPKTFNQLVLELTKLEVALDKSDKLPPWICRNCVHKVENAYDFVLQARKNYKLWLQKLAVKQLLEDTETATLECLQEAPIQLLEIEGVTIKMEEPTETAVPQSDSTSSIDPLIKKDRTEDGSDSDSEDDDVPLQQRQIAYKKLHVMHQCNKCDKTFRYVSNLFRHKREDHSSEHSQTKEQAGEKKTKPYGVKPFFHNLIKSSIAAQSSAADNDSESEDSYYKCDQCDKSYKYIVLLIKHKHTTHVSSQWPTKTKPIRRSGSSAEQTLNQGLPRQRLKPPSTDSLVHSIIKEINLPDEIEEDNSSTDNYYKCDQCDKSYKYIVSLIKHKHNEHKEYNDSDEDEATPSRYAADASTISKPSRIDRRVKGFDLHRCKPNGSKEIQCMICLRRFIKLRQLREHLKAHPKDFTFEAHGEPIERIAEGFYKTAVESTFAGLKRRIFNDLKVGMLGRYYSITNEARYEMNLDSSDTDSDGEADVVERNSYACELCDSPDAVWPRKYQLHEHHRQQHTWLEAPHVCQRCDARFLSAQLLEHHTQKLCQNTLKRFMCDKCPQRFFWRRNLRAHLVDHKTKQETYACDQCSRSFQDKSAVTKHKLMHHDVGNELLPCRWCTRTFYRPALLHKHVQRHGFSGGDLPLAETLLADAAKPSGTKTIVCKLCDMQFVSIGDLRRHNLMLAHSAEVSNYMISTQEGFELQLDETDESDEEPTSTVANRTYKCDLCAMSFLRRRDMSEHQYSLHTFDKLPHSCNHCIFKTVDKSMLEHHLRTQCLNEEKKFKCSRCGYKFMWPESLEQHMSSQHPKSSSQMAVATKRSRRYRYQCPHCWRSFVVQPSLDKHIRDMHVAKKNPGKKYLCSLCGLESLTPNKLSIHMRRHNGEKPFKCDLCDMSFTVHYELKVHRRKHTGERPYQCTFCAKDFARPDKLRRHVYMHSVKR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00567692;
90% Identity: iTF_01324324;
80% Identity: -