Basic Information

Insect: Scaptomyza polygonia
Gene Symbol: -
Assembly: GCA_035044585.1
Location: JAWNNU010001657.1:3008827-3015246[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 2.4e-05 0.0026 18.7 2.1 1 23 262 284 262 284 0.97

2 18 7.8e-06 0.00084 20.2 0.4 1 23 290 312 290 312 0.97

3 18 0.0011 0.12 13.4 0.9 1 23 318 340 318 340 0.95

4 18 1.6e-05 0.0018 19.2 3.1 1 23 346 368 346 368 0.97

5 18 3.7e-05 0.0041 18.1 4.7 1 23 374 396 374 396 0.99

6 18 6.8e-05 0.0074 17.3 5.7 1 23 402 424 402 424 0.97

7 18 3.3e-07 3.6e-05 24.5 4.3 1 23 430 452 430 452 0.98

8 18 1.2e-07 1.3e-05 25.9 2.4 1 23 458 480 458 480 0.97

9 18 7e-05 0.0076 17.2 6.7 1 23 487 509 487 509 0.97

10 18 0.00012 0.013 16.5 6.5 1 23 515 537 515 537 0.98

11 18 1.1e-05 0.0012 19.8 4.5 1 23 543 565 543 565 0.98

12 18 7.9e-06 0.00085 20.2 8.1 1 23 571 593 571 593 0.98

13 18 6.4e-06 0.00069 20.5 7.6 1 23 599 621 599 621 0.97

14 18 7.2e-07 7.8e-05 23.5 7.7 1 23 627 649 627 649 0.98

15 18 0.00022 0.024 15.6 9.5 1 23 655 678 655 678 0.95

16 18 7.9e-05 0.0086 17.1 0.9 1 23 684 706 684 706 0.98

17 18 0.0014 0.15 13.2 4.4 1 23 716 738 716 738 0.98

18 18 9.9e-06 0.0011 19.9 1.6 1 23 744 767 744 767 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	2.4e-05	0.0026	18.7	2.1	1	23	262	284	262	284	0.97
2	18	7.8e-06	0.00084	20.2	0.4	1	23	290	312	290	312	0.97
3	18	0.0011	0.12	13.4	0.9	1	23	318	340	318	340	0.95
4	18	1.6e-05	0.0018	19.2	3.1	1	23	346	368	346	368	0.97
5	18	3.7e-05	0.0041	18.1	4.7	1	23	374	396	374	396	0.99
6	18	6.8e-05	0.0074	17.3	5.7	1	23	402	424	402	424	0.97
7	18	3.3e-07	3.6e-05	24.5	4.3	1	23	430	452	430	452	0.98
8	18	1.2e-07	1.3e-05	25.9	2.4	1	23	458	480	458	480	0.97
9	18	7e-05	0.0076	17.2	6.7	1	23	487	509	487	509	0.97
10	18	0.00012	0.013	16.5	6.5	1	23	515	537	515	537	0.98
11	18	1.1e-05	0.0012	19.8	4.5	1	23	543	565	543	565	0.98
12	18	7.9e-06	0.00085	20.2	8.1	1	23	571	593	571	593	0.98
13	18	6.4e-06	0.00069	20.5	7.6	1	23	599	621	599	621	0.97
14	18	7.2e-07	7.8e-05	23.5	7.7	1	23	627	649	627	649	0.98
15	18	0.00022	0.024	15.6	9.5	1	23	655	678	655	678	0.95
16	18	7.9e-05	0.0086	17.1	0.9	1	23	684	706	684	706	0.98
17	18	0.0014	0.15	13.2	4.4	1	23	716	738	716	738	0.98
18	18	9.9e-06	0.0011	19.9	1.6	1	23	744	767	744	767	0.96

Sequence Information

Coding Sequence: ATGCAGCACGCGAGCGCTGCCAGTTCGGCACCTTCGGTGGTTTCAGCACCGGTGGTGACCACTGGCGGTGGCACCACCATCACCTTGGGCGGAGCACCGCCGTCATTATCAAGTGGCAAACATTCGTCAGAGCATCATAAAGAGGACGGCAGCAAGCCGCCGCATCACAGCCTTGAAATGTATAAAGTAAACATTGAGGATATTTCACAGTTATTTACGTATCACGAAGTCTTTGGCAAAATCCATGGCGATGTGGTCAATCATGTGGCGGCGGTACATGGCAGTCAGTTGCCACCACCGCAGCTGCCACCGCCGCCCCCCCTACCGCCACAGACGACGCATTCGGCAAGCGCAGCTGCAGCCGCAGCGGCGGCGTCCACAAATAATGCAGCCGTTGCTGCCGTAATGGCCTCGGCCAATGCAGCAGccgcggcagcagcagccgcctcAGCAGCGGCAtcagcacaacaacagcaacaacaacagcagcaacaacagcagcagcaacaacaacagcagcaacaacaacagcagcaacaacaacagcagcaacaacagcagcaacagcaacaacaacagccagcgACAAGCACAAATGCTGGAAGCCAGCAGGGTAGCGCCACggtgacaacaacaagctcgGGCAGCAACGGGGGCAATAATAACTCGACAACGACGACGGGTGAGTTGCTAATGCCGAAAATGGAGGGCGGCATCCATGGCGTCGATGGGCAGTCGAGTGTTGCGTTAGCGCCGGATGGCACACCCATTGCGACTGGTACGCATGTGTGCGACATTTGTGGCAAGATGTTTCAGTTTCGCTATCAGCTGATTGTGCACCGCCGCTACCACAGCGAGCGCAAACCGTTCATGTGTCAGGTGTGCGGTCAGGGTTTTACCACATCGCAGGATTTGACCCGTCATGGCAAAATACACATTGGCGGTCCCATGTTCACATGCATTGTGTGCTTCAATGTGTTTGCCAATAATACAAGTTTGGAACGCCATATGAAACGGCATTCAACGGACAAGCCATTCGCCTGCACCATTTGCCAAAAGACTTTCGCACGCAAAGAGCATCTGGACAATCATTTTCGTTCGCATACAGGCGAAACGCCGTTCCGTTGCCAGTACTGCGCCAAGACGTTTACGCGCAAGGAGCACATGGTTAATCATGTGCGCAAACACACGGGTGAGACGCCACATCGTTGCGATATTTGTAAGAAGTCCTTCACGCGCAAGGAACACTATGTTAACCACTACATGTGGCACACTGgtcAAACACCGCATCAGTGCGATGTCTGCGGCAAAAAATACACGCGCAAGgagcacctagccaaccataTGCGCTCCCACACCAACGAGACGCCGTTCCGTTGCGAAATCTGCGGCAAGAGCTTTAGCCGCAAGGAGCACTTCACCAATCACATACTCTGGCATACAGCAGGCGAGACGCCGCATCGGTGCGACTTCTGCTCCAAGACGTTTACGCGCAAGGAGCATTTGTTAAATCACGTGCGCCAGCACACTGGAGAGTCACCGCATCGCTGCTCCTACTGCATGAAGACGTTCACACGCAAGGAGCATCTGGTGAATCATATACGCCAGCACACGGGTGAGACACCGTTCAAGTGCACGTACTGCACGAAAGCGTTTACACGCAAAGATCACATGGTTAATCATGTACGGCAACATACAGGCGAATCGCCGCACAAGTGCACATATTGCACCAAGACGTTTACACGCAAGGAGCATCTAACGAATCATGTGCGCCAGCACACGGGCGATTCGCCACATCGCTGTAGCTACTGCAAGAAGACCTTCACCCGCAAGGAGCATCTGACGAATCATGTGCGCCTGCACACGGGCGACTCCCCGCACAAATGCGAATACTGTCAGAAGACGTTTACGCGCAAGGAGCATCTCAATAACCATATGCGTCAGCACTCCAGCGACAATCCGCATTGTTGCAATGTGTGCAACAAGCCCTTCACGCGCAAGGAGCATCTGATTAATCATATGTCACGCTGCCACACTGGTGATCGTCCCTTTACCTGTGAGACATGCGGCAAATCTTTTCCCCTTAAGGGCAATCTGTTGTTCCATCAGCGTAGCCACACCAAGGGTCAGGAGTGCGAGCGCCCGTTTAACTGCGAGAAATGTCCCAAGAATTTCATATGCAAAGGTCACTTGGTTTCGCACATGCGATCCCATTCGGGTGAGAAACCGCACGCGTGCACACTGTGCAGCAAGGCTTTCGTCGAGCGTGGCAATTTGAAGCGCCACATGAAGATGAATCATCCGGATGCTATGATGCCGCCACCACCCGTGCATCCGCATCCGCAAATACCGGCTGGTGTGCTGACCCAAGTCAAGCAGGAAGTAAAACCGATCATAATTCCCCATCACTCGGCGACGACCACAATGCACACCATTCAGCAAATAACAGCaggcgcagcagcagctggcgcCGGTGCCGTCCAGTTAGCGCCAGGTCTGGTACCTTTGGTCACCAGCTCGCTCATCTCGCACAATGCCCAGTCGCAGAAGCAACAAcaggcggcagcagcagttgccgcTCAACAGcaagcggcagcggcagccgCTGCCCAACAACAGGCcgctgcagcggcagcagcacaacagcaagcagcggcagcagcagctgcagcacaTCAACAGCACCAGCATCAGGTGGctgcacagcagcaacaacagcagcaacaggctgcagttgctgcacatcagcagcagcaacagcaattgcagcagcaacaattgctgcAGCTGTCCATACAGCAAGCCgcacatcatcatcaacagcatcagcagcaacagcagcaacaacaacagcagcagcaacagcaacatcatcagcagcaacagcagcagcaacaacagtcgCATCCGCAGGCACcgccacagcagcaacaacaacagcaacagccgccCCCACAGGTGCCAATTGCATTGATAAGTGATCCGAGCGCGCTGGCACGTGCTGCCATGCAGCTGCAACATCTGCCCACAAATGTTGAACAGCATCCGGTGGTTTACTAG
Protein Sequence: MQHASAASSAPSVVSAPVVTTGGGTTITLGGAPPSLSSGKHSSEHHKEDGSKPPHHSLEMYKVNIEDISQLFTYHEVFGKIHGDVVNHVAAVHGSQLPPPQLPPPPPLPPQTTHSASAAAAAAAASTNNAAVAAVMASANAAAAAAAAASAAASAQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQPATSTNAGSQQGSATVTTTSSGSNGGNNNSTTTTGELLMPKMEGGIHGVDGQSSVALAPDGTPIATGTHVCDICGKMFQFRYQLIVHRRYHSERKPFMCQVCGQGFTTSQDLTRHGKIHIGGPMFTCIVCFNVFANNTSLERHMKRHSTDKPFACTICQKTFARKEHLDNHFRSHTGETPFRCQYCAKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHYVNHYMWHTGQTPHQCDVCGKKYTRKEHLANHMRSHTNETPFRCEICGKSFSRKEHFTNHILWHTAGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCSYCMKTFTRKEHLVNHIRQHTGETPFKCTYCTKAFTRKDHMVNHVRQHTGESPHKCTYCTKTFTRKEHLTNHVRQHTGDSPHRCSYCKKTFTRKEHLTNHVRLHTGDSPHKCEYCQKTFTRKEHLNNHMRQHSSDNPHCCNVCNKPFTRKEHLINHMSRCHTGDRPFTCETCGKSFPLKGNLLFHQRSHTKGQECERPFNCEKCPKNFICKGHLVSHMRSHSGEKPHACTLCSKAFVERGNLKRHMKMNHPDAMMPPPPVHPHPQIPAGVLTQVKQEVKPIIIPHHSATTTMHTIQQITAGAAAAGAGAVQLAPGLVPLVTSSLISHNAQSQKQQQAAAAVAAQQQAAAAAAAQQQAAAAAAAQQQAAAAAAAAHQQHQHQVAAQQQQQQQQAAVAAHQQQQQQLQQQQLLQLSIQQAAHHHQQHQQQQQQQQQQQQQQHHQQQQQQQQQSHPQAPPQQQQQQQQPPPQVPIALISDPSALARAAMQLQHLPTNVEQHPVVY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00560429;
90% Identity: iTF_00560429;
80% Identity: -