Basic Information

Insect: Scaptomyza polygonia
Gene Symbol: tc1a
Assembly: GCA_035044585.1
Location: JAWNNU010000667.1:326167-354068[+]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 4 1.4e-11 3.1e-08 33.8 0.0 1 40 674 714 674 717 0.90

2 4 7.6e-14 1.7e-10 41.0 0.1 2 39 729 766 728 769 0.94

3 4 1.8e-17 4e-14 52.6 0.0 1 45 783 828 783 828 0.98

4 4 1.8e-19 4.1e-16 59.0 0.0 1 43 835 878 835 879 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	4	1.4e-11	3.1e-08	33.8	0.0	1	40	674	714	674	717	0.90
2	4	7.6e-14	1.7e-10	41.0	0.1	2	39	729	766	728	769	0.94
3	4	1.8e-17	4e-14	52.6	0.0	1	45	783	828	783	828	0.98
4	4	1.8e-19	4.1e-16	59.0	0.0	1	43	835	878	835	879	0.97

Sequence Information

Coding Sequence: ATGAAGAGTCCAGATGGTAGGAGACGTGTACGAAGACCTAATGGGAAAAGGTTACATCCTATGTATTGCAAAGGCACTGTTAAGCACGGAGGAGAAAATGTTATGGTCTGGGGTTGTTTCTCTGGACAAGGAATCGGGCCGATTTACAAAATTCATGGAATAATGGATCGATTTCAGTATCTGAATATAATCCAGGACGTCATGCTGCCATATGCCGATGAGGAGATGCCACTCCAATGGAGATTCCAGCATGATAATGACTCAAAACATACAGCACATGTGGTCAAGGATTGGTTGCAGACGAATGGCGTAAAAGTCCTTCGTTGGCCTGCTCAATCGCTGGATTTAAGCCCAATTGAGAACTTGTGGGAGCTaGGTCTACTTCGCACGGCggaacaattaaaaataaaaggttTGTGTGAGCCGGCTGAGAATGCGGATGATTTGAATGACGCAGCATCTGCGACAATTACCGTATCAGAGAACATACAGCAGGCGGTTGTTGGCAACATTGCAAGCATTGTTCCTGGAGCTCCCTCGCCCACGAccgtgcagcagcaacaccaccaacagcagcagcagcagcagcagcagcaacaacaacaacaacaacaacaacaacaacaacaacaacaacagcaacaacagcaacaacaacagcagcagcagcagcaacaacatcagcacgAGCAACAGCAGTTGGTAAACAGTGCACTGATAGCACAGCAGCATGCTCTTGCAACAAACAGTGGCATACAACTGGCCAATGCTACTGGGCAACATCTATTGAGTAATaccagcggcagcagcaataacctgcaacaacaattgcagcaacagttgcagccAACGCCGCGTAAATCGCGACTGCGTAAACGATCAAAGTCGCCAGATTTGCAACTCGGTGGTAACACTGCAACTGTTCAACAACCACAGCCGGCACACcatcagcaacatcatcatccgCAAACGATTCTCATCCAGGGACAAAATCAAACATCGATTGTGAGTCTACAACAAACGGCAGACGGCAATTATATACCCATCAGTTCAGCTGGCGACGACTCCGATAGCGATAATAAGCCGCAAAAGATCTGCAAGACAGAGCAATCGGTGGCTTCGCCGGCATCTAACTCGTCCACATCGAATAATGCTTCTGTGGGCGTGAGCGGCCAGGCGATTGTGACACAAATTGTAGTAGCGCGCGACGGAAAAGATAAAAATATGACTAGTTTAGGCATGGGCATGAATGGCGGTTTGTTGGGCGTGCCCATGGGCTTTCTGGACTTTACACCGGAACCACCAGCACCATCGGCCACACCAGTCACCGTCACTGAACATGTCGATCTGTCGTGCAACCCCAGCACCGATACACGCGATCTATCAAATCCCACCGAACCGCTCGACATAGACAATCATTTGGCTCAGCAAATTCATCGGCTCGATCAATCTCCCATGCATTCGATAGCGCATCATCATTCAACCGGGGACGAGAGCAACTCGAACCTGGTGCAGCATATCAAAAGCGAGGTAATTGAGGCCAAGCACCTTGCCCATGTGCAAGctcagcatcagcagcagcaacaacagcagcagcagcagcaacagcaccagcacgcacatcatcatcatcagatGCACGCTCAGCAACTGTTGGCACagagtcagcagcagcagcaacaacagcagcagcaacaacagcagcagcaacaacagcagcaacatcaacagcaacagtcgGCGGTGCATGCAGCACATGCCACACATGCAGAAATAGGCGGCGCCACTGTCATGGAGATTGATCCGAGTCAGATCAAGAATGAGCCGGGTATGATTATCACGCCAGAGATTGTCAACATGATGTCCACCGGACATATGGACATGTATAACTCGGATACGAGCGAAGACTCAATGATGATCGCTAACGGTTCACCGCACGATCAGAATGAGCCACATTATACGAATTTGGATCAGCAGCACGGCGGATTGGGTGGTCAGTTTAATGGTCCCAAAGCTTGGACACAAGATGATATGAATTCAGCTTTAGATGCATTAAAGAATCAAAACATGAGCCTGACGAAAGCATCTGCCATTTATGGCATACCATCCACGACCTTATGGCAGCGTGCACATCGTTTGGGCATCGAAACGCCTAAGAAGGAGGGCGGCACCAAATCGTGGAACGAGGATGCCTTACAAAATGCTTTGGAGGCATTGCGTTCGGGTCAAATATCGGCAAATAAAGCATCAAAAGCGTTTGGTATACCTTCGTCGACCCTTTACAAGATTGCGCGTCGCGAGGGCATACGTCTGGCGGCGCCATTCAATGCCGCACCAACCACGTGGACACCCGAGGACTTGGAGCGTGCATTAGAGGCGATACGCGCTGGCAATACGTCTGTTCAAAAAGCAAGTGCTGAATTTGGCATACCGACAGGAACACTTTATGGACGCTGCAAACGAGAGGGCATCGAACTATCGCGTTCAAATCCAACTCCTTGGTCCGAGGATGCAATGAATGAGGCTTTAAACTCAGTGCGCGTCGGTCAAATGTCTATCAACCAGGCGGCCATTCACTACAACCTGCCATATAGTTCACTCTACGGACGCTTTAAGCGTGGCAAATACGATGTGGTGGCCAATACCACTGGCGTCTCGCTAAATAATACCTCGGGTAATACGACCGGCAGCATTGAGATAATCGAGCATAGCCAGGAAAATTCGCTGCATATGTTGCAGCAACAGTTCCCGTATAGTCCGTCGCCTCATCCGCCGACGCCTCAGCATCATAGTACGCCGCAGCATCACACTTCGCAGCAAGGACCGCCGACACCACAACAGATGCAACAGCATGTGGTGCACATGCAACAGCAGTCGCCGCACCAGGCAcaccatcaacaacagcagcagcacatgcaacaacaacaggacgTGGTCACATCAAGCAGCCAGGTGGTGCAtagccagcaacagcagcttcaACAGATCTATCAGCATCACGACACGCCCGAGCGTAGTTGA
Protein Sequence: MKSPDGRRRVRRPNGKRLHPMYCKGTVKHGGENVMVWGCFSGQGIGPIYKIHGIMDRFQYLNIIQDVMLPYADEEMPLQWRFQHDNDSKHTAHVVKDWLQTNGVKVLRWPAQSLDLSPIENLWELGLLRTAEQLKIKGLCEPAENADDLNDAASATITVSENIQQAVVGNIASIVPGAPSPTTVQQQHHQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQHQHEQQQLVNSALIAQQHALATNSGIQLANATGQHLLSNTSGSSNNLQQQLQQQLQPTPRKSRLRKRSKSPDLQLGGNTATVQQPQPAHHQQHHHPQTILIQGQNQTSIVSLQQTADGNYIPISSAGDDSDSDNKPQKICKTEQSVASPASNSSTSNNASVGVSGQAIVTQIVVARDGKDKNMTSLGMGMNGGLLGVPMGFLDFTPEPPAPSATPVTVTEHVDLSCNPSTDTRDLSNPTEPLDIDNHLAQQIHRLDQSPMHSIAHHHSTGDESNSNLVQHIKSEVIEAKHLAHVQAQHQQQQQQQQQQQQHQHAHHHHQMHAQQLLAQSQQQQQQQQQQQQQQQQQQQHQQQQSAVHAAHATHAEIGGATVMEIDPSQIKNEPGMIITPEIVNMMSTGHMDMYNSDTSEDSMMIANGSPHDQNEPHYTNLDQQHGGLGGQFNGPKAWTQDDMNSALDALKNQNMSLTKASAIYGIPSTTLWQRAHRLGIETPKKEGGTKSWNEDALQNALEALRSGQISANKASKAFGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLERALEAIRAGNTSVQKASAEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMNEALNSVRVGQMSINQAAIHYNLPYSSLYGRFKRGKYDVVANTTGVSLNNTSGNTTGSIEIIEHSQENSLHMLQQQFPYSPSPHPPTPQHHSTPQHHTSQQGPPTPQQMQQHVVHMQQQSPHQAHHQQQQQHMQQQQDVVTSSSQVVHSQQQQLQQIYQHHDTPERS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00470787;
90% Identity: iTF_01320386;
80% Identity: -