Spol002557.1
Basic Information
- Insect
- Scaptomyza polygonia
- Gene Symbol
- retn_1
- Assembly
- GCA_035044585.1
- Location
- JAWNNU010000311.1:1259385-1269379[+]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.9e-26 8.9e-23 81.1 0.0 2 89 20 105 19 105 0.96 2 2 1.8 5.4e+03 -1.5 0.2 20 39 265 289 221 304 0.58
Sequence Information
- Coding Sequence
- ATGCTTCTATCCGACGATCAAATCCAGGagCTCTATGAAATCAATGATGATCCCAAACGCAAGGAGTTTCTCGAtgatttgttttcatttatgcAAAAGCGAGGCACGCCCATCAATCGTTTGCCCATAATGGCCAAATCGGTGCTGGATCTATATGAGCTATATAATTTGGTGATCGCACGAGGCGGTTTGGTCGATGTCATCAACAAGAAGCTATGGCAGGAGATTATCAAGGGACTGCATCTGCCATCGAGCATAACAAGTGCAGCATTCACATTGCGTACACAATACATGAAGTATTTGTATCCCTACGAGTGCGAGAAGAAGAATTTGAGTACACCAGCTGAACTGCAGGCGGCAATTGATGGCAATCGTCGCGAAGGACGTCGTTCCAGCTATGGCCAATACGAGGCCATGCACAATCAGATGCCAATGACGGCCATATCTCGGCCACCGTTGCCTGGTGGAATGCAACAGATGTCGCCACTGGCGCTTGTTACACACGCAGCCGCTGCCAACAATCAGCAGGCGCAGGCAGCGGccgcagcggcagcagcacaTCGACGATTGATGGGTGGACCAGCGTTTGGTCAGATGCCCAATTTGGTGACACAAGAGATTGAGAATCGTATGATGGAGTATCTGCAGCTTATACAGGCGAagaaggagcagcagcagcagcagtcagtACTGGGCGCTGCACTTCcccaccaacaacagcaacaacaacagcaacaatcgctgcatcatcatcaacagcaacaacaacaacaacagcaacagcagcgtcAACGTTCACAAAGTCCTGAGCTTAGTACTCGTGATGCACTGAGCGCACAAGTGGCGCTTTGGCATATGTACCACAACAGCAGTCCAACCGGTTCGGCGCACACATCACCGCAGCAACGCGAGGCTTTAAACCTCTCCGATTCGCCACCAACTTTGAATTTGAATCACATCAAACGCGAACGTGAACGCGATCCAACGCCCGAGCCCACAGATCTTGAGGAATCAGCACATCAGCCGCCGCCGGCCAAGCGTGTGGGCAGCGGCCTAATGCCGCCCGGCTTTCCCGCAAACTTCTACTTAAATCCACACAATATGGCCGctgtggcagctgctgctggtttTCATCATCAGGCCGCAGCCaacaatcatcatcatcagcagcagcagcaacaacagcagcacgaTGCAACATCGGAAGGTGAACCCGATGATGATTATGGCAATGGAGAGCACAATACCAGCGGCAATTCAACGTCTTTGAACGATGAAAGTGAATCACAGCAAATAAATggacatcatcatcatcatcataatcatcatcatcatgatgatCATGATCATGATCACCATAGTAATCATCAGAATCATTTGGATAAATCAGATGATTCGGCAATTGAAAATTCACCCAGCacatcgacaacaacaacaacgacaacatcgCATCGTCACAGTTCGCCAGTGTCCACCAAAAAGAAGAGtagcgtcaacaacaacaacaacattaacaacaacaacaacaatagcaccAAGACACAATCCTCAAGTCCAAAGGATGCAGGCAACAAAAGTGGAATTGGCAGCGACGATGCCAAACTAAATCCACTCGAAACGCTTAGTCTGCTTTCGGGCATGCAATTTCAAGTGGCACGCAATGGCATCAATGCAAATGGTGAACAGCAATTGGTAGTCAATCTCGAATTGAATGGCATTAAATATACGGGTGTGCTGGTGGCATCCActggagcaacagcaacagcaaccaaaccaacagcagcaataagaACAGAGAAGAAGTTGCAGCAGGAGCAGCCAGAGTTGCCAACTGCAGCTGAGGAGCCAACAATTGGTGGCAATGAGGATGTGCTTCAGAATGAAAACAGCGAGGAATTAAGCCAAAATGAGGCTATTGATGATGAatcaacaacgacaacaacaataccacaggaacaacaacagcaacaacacacagAAGACATTGTGAATGGAACGGCGAGTGTTGTTGGTGGAGGGATTGGTTTAGGTGGGGTAGGGGTTGGTTTAAGTGTGGTTGGTGCAAGTCTGCTCAAAGATGCTGTGGTCAGTTCGTAA
- Protein Sequence
- MLLSDDQIQELYEINDDPKRKEFLDDLFSFMQKRGTPINRLPIMAKSVLDLYELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYPYECEKKNLSTPAELQAAIDGNRREGRRSSYGQYEAMHNQMPMTAISRPPLPGGMQQMSPLALVTHAAAANNQQAQAAAAAAAAHRRLMGGPAFGQMPNLVTQEIENRMMEYLQLIQAKKEQQQQQSVLGAALPHQQQQQQQQQSLHHHQQQQQQQQQQQRQRSQSPELSTRDALSAQVALWHMYHNSSPTGSAHTSPQQREALNLSDSPPTLNLNHIKRERERDPTPEPTDLEESAHQPPPAKRVGSGLMPPGFPANFYLNPHNMAAVAAAAGFHHQAAANNHHHQQQQQQQQHDATSEGEPDDDYGNGEHNTSGNSTSLNDESESQQINGHHHHHHNHHHHDDHDHDHHSNHQNHLDKSDDSAIENSPSTSTTTTTTTSHRHSSPVSTKKKSSVNNNNNINNNNNNSTKTQSSSPKDAGNKSGIGSDDAKLNPLETLSLLSGMQFQVARNGINANGEQQLVVNLELNGIKYTGVLVASTGATATATKPTAAIRTEKKLQQEQPELPTAAEEPTIGGNEDVLQNENSEELSQNEAIDDESTTTTTIPQEQQQQQHTEDIVNGTASVVGGGIGLGGVGVGLSVVGASLLKDAVVSS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00570178;
- 90% Identity
- iTF_01321700;
- 80% Identity
- -