Basic Information

Insect: Scaptomyza parva
Gene Symbol: ush
Assembly: GCA_035044645.1
Location: JAWNNT010000101.1:11091651-11098000[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.0067 0.45 11.0 0.0 1 20 204 223 204 225 0.90

2 9 0.00029 0.019 15.3 0.8 1 23 281 303 281 303 0.98

3 9 0.051 3.4 8.3 1.0 2 21 352 371 352 372 0.92

4 9 0.05 3.3 8.3 2.9 2 21 746 765 745 766 0.93

5 9 0.0093 0.62 10.6 0.0 3 21 816 834 814 835 0.91

6 9 0.0067 0.44 11.1 0.0 2 23 905 926 904 926 0.98

7 9 0.0039 0.26 11.8 1.3 1 23 932 954 932 954 0.99

8 9 0.0014 0.091 13.2 1.9 1 23 1017 1040 1017 1040 0.96

9 9 0.31 21 5.8 0.7 2 20 1151 1169 1150 1171 0.91

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.0067	0.45	11.0	0.0	1	20	204	223	204	225	0.90
2	9	0.00029	0.019	15.3	0.8	1	23	281	303	281	303	0.98
3	9	0.051	3.4	8.3	1.0	2	21	352	371	352	372	0.92
4	9	0.05	3.3	8.3	2.9	2	21	746	765	745	766	0.93
5	9	0.0093	0.62	10.6	0.0	3	21	816	834	814	835	0.91
6	9	0.0067	0.44	11.1	0.0	2	23	905	926	904	926	0.98
7	9	0.0039	0.26	11.8	1.3	1	23	932	954	932	954	0.99
8	9	0.0014	0.091	13.2	1.9	1	23	1017	1040	1017	1040	0.96
9	9	0.31	21	5.8	0.7	2	20	1151	1169	1150	1171	0.91

Sequence Information

Coding Sequence: ATGGCTGCATACAACgcccaccaccagcagcagcagcaacagcaacaacaacagcagcagcaacagcaacaacaacaacatcagcaacaacaacaacaatgctgccCAAATTCCAAAGATTTGGGCGCACATGAGCTGAGCGAggagaagcaacagcagcaccaattACAGCTCGAGGATCAGCCCGAGGACGAGCAGTTAGATCATCAATCCAACAACTCCTCCGCCTCCCAGCCCATAGAGACTGACATGGACCAGGAAGACGACACAGTTCAGGATAATGCCAGCGAGCATAAGTTGGCggagaacacaacaacaacgacgacaccACCTCGCAGCCCAACGCCCGAGCTGGTGCCCAAGTTGGAGCGAGCTGATACACCACCCTCTGTGCCAGCCTCGCCCAGTCCACCACCTCGTACGCCCACGCCTCCGCCACTAGTGTTACCCAAGCTGCGACTCAACGCGTTGCTTGCCTCCGATCCAGCACTGAAACCCGATGCCAAGGAGCTTCATCTGCATGAGTCACGATTGTTGGGTCCACCACCCAAGCcggaacagcagcagaaaagtCTTCCTGAGGTGGAGCCACTGTCGAAACCGACCCGATTTATGTGCCTGCCCTGCGGCATAGCCTTCAGTTCACCCTCAACATTGGAGGCGCATCAAGCGTACTATTGCTCCCATCGCAACAAGGATGCCGATGAGGATACAAACGCATCGTGTGATAAGGTGGCTGCCAACAGTGGAGGCGCCACCAACGCCAACAGCAACTCCAGCGGCTCAAGTTGTGGCACAGGTTCCGAACCACCCAACAAGGTGTCGCGCATTGGAAAGCAATATGCTTGCACACAATGCTCGTACAGCGCCGACAAGAAAGTCTCCCTCAATCGACACATGCGCATGCATCAAACATCGCCAGCGGCACCCAGCTTAAATAGTTTATCCAGCCTAACGGCGAAtggtgttgttgccgctgcagccgccgctgctgctgctgcagctgccgcagGTGCACAGCTCGAGGAGAGCTCTAGTCAACAAATTGATCGCTACTGCAGCGACTGTGATATCCGcttcaacaacatcaagacGTATCGAGCCCACAAGCAGCATTACTGCAGCTCCCGTCGCAGTGACGGACAACTGACGCCCAAGCCAGAGGCGGGTGGCATTGCTGGAGCAGGAGCTGGTGGAGTTGCTggcgctgcagctgcagcagtggctgctgttgctgccggcaAGCATAGTCCACAGACACGCAACAAGACACCAACGCCTGCaatggttgctgctgctgctgccgccgccgctgctgcagctgcctcgATGCAGGTGACGCCGCCACAACCCTTTCTGGCACTGCCCACCAATCCAATCATCATAGTGCCCTGCTCGCTTATACGTGCAGCCAGCTTAATACCAGGGCCACTCACAACCTCCACGTCGGGCATTGTTAATCCAGAGAGTACGTGCTTTACTCTCGACAATGGTGCTTTGAAGCCTTTAGCCACAGCTCTGAATATAAATGCATTAGGTAGtagtgccacgcccacgcctATGCCTACTAGCAATCAAATACCAATTCCCGCTCTAGAGCCAGATCGTCCAACTGCTGCAAGCATTTTGAACAACCAGGAAGCCGAAACCAAAAGCAGTCCACCAGAACCCAAACGCAAGGAAGCAAGTGGAACACGTGAAACTACTCCCTTGGACTTATCGCTTAGACGCTCACCGATTTCTGCGCTTCTCCATCGCCAACGTCTTGTGCGTTCTGCCGCAGCGCTGCTCGAGGCCGAGGAAGCTGCTGGCAAGGATCATTTGGAGAGCATAAGTGGCGGAAGTGTTACGCCCGAGCAAATTGTTTGCGCACCCTCGCTGCCTAGCAGCCCCTCGATGAGTCCATCGCCAAAGCGGCGAGCTTTGAGTCCACGCAGCTCTGGAGCGGGCAGTGCTTCATCGATGTCCCCGCCAGCTTCTCATCTGCTGGACAGTTTGCCACCATTGCGTTCCATGCTGCCCTCCGATTTTGCGCTATCCGAATCGCTGCTGGCCAAGACTAATCCGGAGCTGGCTCTGaaattggcagcagcagctgcggcagctgtggcaggcagcagcccAGCAGAGTTGGCCAAGCTCGGTTTCCCAGGAGCAGCAACTAACAATCCTTCTGCTGCCGCACCACCCCCAACACAGAATGCACCACAGATCTATGTGAAGCAGGGCGTCTCGAAGTGCAAGGAGTGCAATATTGTCTTTTGTAAATATGAAAACTATTTGGCCCATAAGCAACATTATTGCTCTGCACGCAATCAGGACACGGGTCTGGATGGAGATGGCTCCAAGAGTGCGGTGACGCCACCAAGTGGACTGTCCTCTGGTGGTGGCAATGCTGGGGCCTCTGCTGCAGAAACCACTCCAGTTGCCTATCAGCAGCTCATTTGCGCAGCCTGTGGTATTAAATATACCTCATTGGATAATTTGCGTGCACATCAGAACTACTACTGTCCGAAAggtggcgctgctgctgcggcggctgcGACACCTGCTGAAGCTGCACCAGCCCCACAGCTACCAGTTGCGCTTCCCAAGGAGAAGTGTTTGAAGTGCAAGACACACCATGAGCATGGCCAGAACTGTCCAGCACCACCGGTAACACCACAACTGCCTGCTCCCTCCTCCATCTCTGCCACCTCGAATAGCGTGAACAAGTGTCCAGTTTGTGGTGTTGTTAGTCCCACTGCTGCGCTGGCTCGCAAGCACATGGAGATGCATGGCACAGTGAAGGCTTTTCGCTGTTCCATCTGCCAGTATAAGGGAAACACCCTGCGTGGCATGCGCACCCACATTCGCACCCATTTCGATAAGAAGACCAGCGATGTTAATGAAGAGCATTACATGACTTGCATCTTTGAGGAGGatgtggcagctgcagcaaatgCCGTTGCAGCTCCTCCAACTCTTGATCTTccagcagtggcagcggcggcagcagcagcagctgcagcggctCAAGAGCAATTGGATCAGCATCCGGCACAGCTTTTCAATTGCGATCATTGCAATTACGCCTCAACATACAAAGGCAATGTGCTACGTCACATGAAACTACTGCATCCACATGTGGCCATAAGTTCACCCTCCATATCACCCGAGTCACGTGAACAGGAAGCCAATGCTCATGCACTGCCCGAAACAGGTTTAGTAAATGGGGATCGGGAAGCAGCAGCTTTGGGCAGCTTCCACGTCAAAACGGAACCACTGGAGCCACCAGTAGCCACTTTGGGTCTAATGCATGAGAACAACAACTCACCCATTGGCACACCACATACCCACATTAAAGCTGAACCCATGGAACTGGGCGTAGATGTATCAGCAGTACCAACGCTACCACCACCAATTGCCAACTCCCCGCTTGGCCCTAGCGCAGCTGAGGCAATGAAGAAATACTGCTCCACCTGCGACATATCCTTCAACTATGTAAAGACCTTTTTGGCTCACAAACAATTCTATTGCAAGAGCAAATTGCATCGACCAGAGGCAAATGATAGCCCCAGTCCCACAGTGGGTGGTGGCGCCCTAATGCCGCTGCAATCGCCCAgcgagctgctgttgctgcagaaGAACAAGGAGAATCTGCAGGAGGCGGCCATTTGA
Protein Sequence: MAAYNAHHQQQQQQQQQQQQQQQQQQHQQQQQQCCPNSKDLGAHELSEEKQQQHQLQLEDQPEDEQLDHQSNNSSASQPIETDMDQEDDTVQDNASEHKLAENTTTTTTPPRSPTPELVPKLERADTPPSVPASPSPPPRTPTPPPLVLPKLRLNALLASDPALKPDAKELHLHESRLLGPPPKPEQQQKSLPEVEPLSKPTRFMCLPCGIAFSSPSTLEAHQAYYCSHRNKDADEDTNASCDKVAANSGGATNANSNSSGSSCGTGSEPPNKVSRIGKQYACTQCSYSADKKVSLNRHMRMHQTSPAAPSLNSLSSLTANGVVAAAAAAAAAAAAAGAQLEESSSQQIDRYCSDCDIRFNNIKTYRAHKQHYCSSRRSDGQLTPKPEAGGIAGAGAGGVAGAAAAAVAAVAAGKHSPQTRNKTPTPAMVAAAAAAAAAAAASMQVTPPQPFLALPTNPIIIVPCSLIRAASLIPGPLTTSTSGIVNPESTCFTLDNGALKPLATALNINALGSSATPTPMPTSNQIPIPALEPDRPTAASILNNQEAETKSSPPEPKRKEASGTRETTPLDLSLRRSPISALLHRQRLVRSAAALLEAEEAAGKDHLESISGGSVTPEQIVCAPSLPSSPSMSPSPKRRALSPRSSGAGSASSMSPPASHLLDSLPPLRSMLPSDFALSESLLAKTNPELALKLAAAAAAAVAGSSPAELAKLGFPGAATNNPSAAAPPPTQNAPQIYVKQGVSKCKECNIVFCKYENYLAHKQHYCSARNQDTGLDGDGSKSAVTPPSGLSSGGGNAGASAAETTPVAYQQLICAACGIKYTSLDNLRAHQNYYCPKGGAAAAAAATPAEAAPAPQLPVALPKEKCLKCKTHHEHGQNCPAPPVTPQLPAPSSISATSNSVNKCPVCGVVSPTAALARKHMEMHGTVKAFRCSICQYKGNTLRGMRTHIRTHFDKKTSDVNEEHYMTCIFEEDVAAAANAVAAPPTLDLPAVAAAAAAAAAAAQEQLDQHPAQLFNCDHCNYASTYKGNVLRHMKLLHPHVAISSPSISPESREQEANAHALPETGLVNGDREAAALGSFHVKTEPLEPPVATLGLMHENNNSPIGTPHTHIKAEPMELGVDVSAVPTLPPPIANSPLGPSAAEAMKKYCSTCDISFNYVKTFLAHKQFYCKSKLHRPEANDSPSPTVGGGALMPLQSPSELLLLQKNKENLQEAAI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00538480;
90% Identity: iTF_01324435;
80% Identity: -