Spar000040.1
Basic Information
- Insect
- Scaptomyza parva
- Gene Symbol
- lrrfip2_1
- Assembly
- GCA_035044645.1
- Location
- JAWNNT010000001.1:289249-308486[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 4.2e-100 7.3e-96 320.9 20.6 2 257 91 341 90 363 0.94
Sequence Information
- Coding Sequence
- ATGTATCCGGTTGATATGGCCGGATTTGCTGTGAGCGTTATGTTCCTGCATGAGCGTCCACATGCAAAGATGCCCTGCAAGCTGGGCTACGAGGAGGATGGCTTTCTGCGTAGCCTGGCGCCGCTGCAAAACACTGAAATCGACATGCTCGCCGATGAGTGTAGAGATATACTCATGTGGCATACGCAGACAAAAAAGAATCCGGCTGCACAGCCGTTTAATGCGACGCGTTATGGAATCTGGCGTTCATTGAAAAGGTGCTGGTGCGGCCAAGCCCGCTTGGCAGCTCGCCGACAAGCACGTGCTGAGGCTCGTGAGATTCGTATGCGAGAGCTTGAGCGGCAACAAAAGGAACTGGAACAAAACGCTGACCGCGCCTTTGACATGCACACCAGTGGCAATATTATAATCGACACTTTTTCATCGCACCCCTCACGTATTACTTACGGTGGTCTTCTAAACTTAACCCGATCAACAGCCTCACGACGCAGCAGTGAAGATTCATTGGAAGATGAAAGTCGCAGTTTGCGTGATATTAAACATGATCTTAAAGAAATTGAAGAACGCTTTAGAAAAGCAATGATAACGAATGCCCAGTTAGACAACGACCGCTCATCTCAAACATATGAAGTAAAGCTTCTTAAAGATAAAAGTGAAACGATGCAGGAGGCTTTTGCACAACTTCAACGcgaactaaaaaataaattaagggATTGTAATGCCCTAAAACGAAACTTGGAACGTACGACACTTGAATTAAACCTGGTGCAAGGCCAACTAACTGAACGCGATTCTTTAATAGCGGAACATGgccttgttattgttgccataGAAAATACTGATGGTAGTGATGCCAAGCGATCTTTAGTCAGTATTGACAACGCCAATACCTTGGCAACAGTTCAGGGTTCGCTGGATGTAAGACTAAAAAAGTTGGCAGGCGAGAAGGAACGGCTTCTAATCGAAATGCAAAATCTCCGTGAACAGTTAGATGCTTATAAAACTGAAGGACGCAGTAGTTCTTTAAATGGCCCCGTaggttatgatgatgattacgAACTCCAAAGTAAGTTTTCAAAACGGGCCATTCCCACACATCACAGCTTGTGA
- Protein Sequence
- MYPVDMAGFAVSVMFLHERPHAKMPCKLGYEEDGFLRSLAPLQNTEIDMLADECRDILMWHTQTKKNPAAQPFNATRYGIWRSLKRCWCGQARLAARRQARAEAREIRMRELERQQKELEQNADRAFDMHTSGNIIIDTFSSHPSRITYGGLLNLTRSTASRRSSEDSLEDESRSLRDIKHDLKEIEERFRKAMITNAQLDNDRSSQTYEVKLLKDKSETMQEAFAQLQRELKNKLRDCNALKRNLERTTLELNLVQGQLTERDSLIAEHGLVIVAIENTDGSDAKRSLVSIDNANTLATVQGSLDVRLKKLAGEKERLLIEMQNLREQLDAYKTEGRSSSLNGPVGYDDDYELQSKFSKRAIPTHHSL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -