Spar007501.2
Basic Information
- Insect
- Scaptomyza parva
- Gene Symbol
- -
- Assembly
- GCA_035044645.1
- Location
- JAWNNT010000090.1:23252699-23265650[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.1e-11 1.7e-08 33.9 0.0 1 40 578 618 578 621 0.90 2 4 6.1e-14 9.7e-11 41.2 0.1 2 39 633 670 632 673 0.94 3 4 1.4e-17 2.3e-14 52.8 0.0 1 45 687 732 687 732 0.98 4 4 1.5e-19 2.3e-16 59.2 0.0 1 43 739 782 739 783 0.97
Sequence Information
- Coding Sequence
- ATGAATCCTTGCTTGTTAGTAAGAAGCGTAACGGTGGAGGATGTATTGACTGGGGGTCTACTACGCACCGCggaacaattaaaaataaaaggtCTGTGTGAGCCGGCTGAAAATGCGGATGATTTGAATGATGCAGCATCTGCAACAATAACTGTATCAGAGAACATACAGCAGGCGGTTGTTGGCAACATTTCACACATTGTGCCTAGCGCTCCATCACCCCCGatcgagcagcagcaacatcaccaacaacagcagcaacagcatcagcacgagcaacagcagctggtaAACAGTGCATTGTCAGCACAGCAGCAGACTCTTGCAACAAGCAGTAGCATACAATTGGCCAATGCAGAGCAACAGCTTCTGAGTACcacaagcggcagcagcagcaccctgcaacaattgcagcaacaacagttacagCCAACGCCGCGCAAATCGCGACTGCGTAAACGATCAAAATCCCCAGACTTGCAACTTGGTGGCAATACTACAACTGTTCAACAATCACAGCCGGCAcaccatcagcaacatcatAATCATCCGCAAACGATACTCATCCAGGGACAGAATCAAACATCTATTGTGAGTCTACAGCAAACGGTTGACGGCAATTATATACCCATTAGTTCAGCTGGTGACGACTCCGATAGTGATAATAAGCCGCAAAAAATCTGCAAGACAGAGCAATCGGTGGCCTCGCCGGCATCCAACTCGTCTACATCAAATAATGCTGCAACGAGCGTGAGCGGCCAAGCGATAGTGACACAAATTGTAGTAGCGCGCGAcggaaaagataaaaatatgaCTAGTTTAGGCATGGGCATGAACGGAGGTTTGTTAGGCGTGCCCATGGGCTTTCTGGACTTTACACCGGAACCACCAGCACCATCGGCCACACCAGTCACCGTTACGGAACATGTCGATCTATCGTGCAACCCCAGCACTGATACACGCGATCTTTCAAACCCTTCCGAACCGCTCGACATAGATAATCATCTGGCTCAGCAAATCCATCGGCTTGATCAATCGCCCATGCATTCGATAGCGCATCATCATTCAACCGGCGACGAGAGCAACTCGAATCTGGTGCACCATATCAAAAGTGAGGTGATTGAGGCAAAACACCTTGCCCATGTGCAagcgcagcaacaacaacaacaacaacaacaacaacaacaacaacaacaacaacaacaacagcagcaacaacaacaacaacaacatgcacatcatcatcatcatcagtcgCACGCTCAGCAACTGTTGGCTCAgagtcagcagcaacagcagcagcaacagcagcagcaacagcagcaacaacagctgcagcaacagcagcagcaacagcagcagcaacagcagcaacaacaacaacagcaacaacaacaacagtcggCGGTGCATGCAGAAATAAGCAGCGCCACTGTTATGGAGATTGATCCGAGCCAGATCAAAAATGAACCGGGAATGATTATCACGCCAGAGATTGTCAATATGATGTCCACCGGACATATGGACATGTACAACTCTGATACGAGCGAGGACTCAATGATGATCGCTAACGGTTCGCCGCACGATCAGAATGAGCCGCATTATACGAATTTGGATCAGCAGCACGGTGGAATGGGTGGCGGTGTTTGTGGCCCTAGCGtcggtggtggtgttggtagTGGTGGTGGTAATGCTGGCGAGAAAGGTCAGTTTAATGGTCCCAAAGCTTGGACACAAGATGATATGAATTCAGCTTTAGATGCATTAAAGAATCAAAACATGAGCCTGACGAAAGCATCTGCCATTTATGGCATACCATCAACGACTTTATGGCAGCGTGCACATCGTTTGGGCATCGAAACGCCTAAGAAGGAGGGCGGCACCAAATCGTGGAACGAGGATGCCTTGCAAAATGCGTTGGAGGCATTGCGTTCGGGTCAAATATCGGCAAATAAAGCATCAAAGGCTTTTGGTATTCCTTCATCGACACTCTACAAGATTGCGCGTCGCGAGGGTATACGACTAGCTGCACCATTTAATGCCGCACCAACCACGTGGACACCCGAGGACTTGGAGCGTGCATTAGAGGCGATACGTGCTGGCAATACGTCCGTACAAAAAGCAAGTGCTGAATTCGGCATTCCGACAGGAACACTTTATGGTCGCTGCAAACGAGAAGGCATTGAACTGTCGCGTTCGAATCCAACTCCTTGGTCCGAGGATGCCATGAATGAAGCATTAAACTCAGTGCGCGTCGGTCAAATGTCTATTAATCAGGCGGCCATTCACTACAACCTGCCATATAGTTCACTCTACGGACGCTTCAAGCGTGGCAAATACGATGTGGTAGCCAATACTAGTGGTGTTTCGCTTATTAACACATCGGGTAATACGACCGGCAGCATTGAGATAATCGAGCACAGTCAGGAAAATTCGTTGCatatgttgcagcaacagttcCCGTACAGCCCTTCGCCACATCCGCCGACTCCTCAGCATCATAGTACGCCGCAGCATCACAGTTCTCAGCAGGGACCGCCGACGCCGCAGCAGATGCAACAGCATGTAGtgcacatgcaacagcagTCACCGCACCCTGcacaccatcaacaacaacagccgcacATGCAGTTGGATGTAGTTACATCAAGCAGCCAGGTGGTGCAGAgtcagcagctgcaacagatCTATCAGCATCACGGCACGCCCGAGCGTAGTTGA
- Protein Sequence
- MNPCLLVRSVTVEDVLTGGLLRTAEQLKIKGLCEPAENADDLNDAASATITVSENIQQAVVGNISHIVPSAPSPPIEQQQHHQQQQQQHQHEQQQLVNSALSAQQQTLATSSSIQLANAEQQLLSTTSGSSSTLQQLQQQQLQPTPRKSRLRKRSKSPDLQLGGNTTTVQQSQPAHHQQHHNHPQTILIQGQNQTSIVSLQQTVDGNYIPISSAGDDSDSDNKPQKICKTEQSVASPASNSSTSNNAATSVSGQAIVTQIVVARDGKDKNMTSLGMGMNGGLLGVPMGFLDFTPEPPAPSATPVTVTEHVDLSCNPSTDTRDLSNPSEPLDIDNHLAQQIHRLDQSPMHSIAHHHSTGDESNSNLVHHIKSEVIEAKHLAHVQAQQQQQQQQQQQQQQQQQQQQQQQQQQHAHHHHHQSHAQQLLAQSQQQQQQQQQQQQQQQQLQQQQQQQQQQQQQQQQQQQQQQSAVHAEISSATVMEIDPSQIKNEPGMIITPEIVNMMSTGHMDMYNSDTSEDSMMIANGSPHDQNEPHYTNLDQQHGGMGGGVCGPSVGGGVGSGGGNAGEKGQFNGPKAWTQDDMNSALDALKNQNMSLTKASAIYGIPSTTLWQRAHRLGIETPKKEGGTKSWNEDALQNALEALRSGQISANKASKAFGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLERALEAIRAGNTSVQKASAEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMNEALNSVRVGQMSINQAAIHYNLPYSSLYGRFKRGKYDVVANTSGVSLINTSGNTTGSIEIIEHSQENSLHMLQQQFPYSPSPHPPTPQHHSTPQHHSSQQGPPTPQQMQQHVVHMQQQSPHPAHHQQQQPHMQLDVVTSSSQVVQSQQLQQIYQHHGTPERS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00470787;
- 90% Identity
- -
- 80% Identity
- -