Basic Information

Insect: Scaptomyza pallida
Gene Symbol: zfh1
Assembly: GCA_018152965.1
Location: JAECXP010000260.1:4138549-4143247[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 2.6e-05 0.0019 18.6 1.0 1 23 139 161 139 161 0.97

2 15 0.69 51 4.7 3.1 3 23 169 189 167 189 0.89

3 15 8.8e-05 0.0065 16.9 0.1 1 23 365 387 365 387 0.98

4 15 0.011 0.82 10.3 0.7 1 23 393 415 393 415 0.98

5 15 3.3e-05 0.0025 18.2 2.2 1 23 446 469 446 469 0.95

6 15 0.004 0.29 11.7 2.6 1 23 506 528 506 528 0.94

7 15 0.017 1.3 9.7 1.3 1 23 534 557 534 557 0.97

8 15 0.026 1.9 9.2 0.4 3 19 566 582 565 583 0.95

9 15 0.00015 0.011 16.2 5.6 1 23 592 614 592 614 0.97

10 15 0.04 2.9 8.6 1.2 2 23 620 641 619 641 0.96

11 15 9e-06 0.00066 20.0 1.0 1 23 650 672 650 672 0.98

12 15 0.001 0.075 13.6 0.1 3 23 680 700 678 700 0.97

13 15 5.4e-05 0.004 17.6 0.5 1 23 706 728 706 729 0.95

14 15 0.022 1.6 9.4 0.5 1 23 739 761 739 761 0.97

15 15 0.0015 0.11 13.0 0.4 1 23 1255 1277 1255 1277 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	2.6e-05	0.0019	18.6	1.0	1	23	139	161	139	161	0.97
2	15	0.69	51	4.7	3.1	3	23	169	189	167	189	0.89
3	15	8.8e-05	0.0065	16.9	0.1	1	23	365	387	365	387	0.98
4	15	0.011	0.82	10.3	0.7	1	23	393	415	393	415	0.98
5	15	3.3e-05	0.0025	18.2	2.2	1	23	446	469	446	469	0.95
6	15	0.004	0.29	11.7	2.6	1	23	506	528	506	528	0.94
7	15	0.017	1.3	9.7	1.3	1	23	534	557	534	557	0.97
8	15	0.026	1.9	9.2	0.4	3	19	566	582	565	583	0.95
9	15	0.00015	0.011	16.2	5.6	1	23	592	614	592	614	0.97
10	15	0.04	2.9	8.6	1.2	2	23	620	641	619	641	0.96
11	15	9e-06	0.00066	20.0	1.0	1	23	650	672	650	672	0.98
12	15	0.001	0.075	13.6	0.1	3	23	680	700	678	700	0.97
13	15	5.4e-05	0.004	17.6	0.5	1	23	706	728	706	729	0.95
14	15	0.022	1.6	9.4	0.5	1	23	739	761	739	761	0.97
15	15	0.0015	0.11	13.0	0.4	1	23	1255	1277	1255	1277	0.98

Sequence Information

Coding Sequence: ATGAACAACCAGGATTATGGCGGCATCCATTGGATACAGCAGGAGAGCAGTGCTGCCGACGACACCGACAGCGAGGTGACTGCCGCCTATTTAGTGAATGGGAATGCCACAGACGAGGATCTCGACCATATGGCAGCCGAAAACCTCATCTTTATGCGCGACGGTCAACTGAGCGAGATCATCGCAGCAAATGAGGCTGGAGGCACTGTGTTGATCACAGACAGCGGCAATGTTGCCTATGCCGAATCCTTTGATGATGATGCTCAGGTTGTCACCGAAGAGATCATCACCGATGACTGGGTGCAGCACCAAGGGGCAGAGCGCGTGGAAATTGCGGCGGAGCAAATAGCTGGCAATGGCAGTTCTCAGGAACTGTTGGACATGCAGCAGAATGAGTATATGGCCATGCGTCCCTATCCCTGTGACTTTTGTAGCCGTCGCTTTCGCAAAAAAGCCAGTCTCAATAACCATATGCTGGCCCATCAAAACGATCGTCCGCATTTGTGCAAGCTGTGCGGAGGGCGTTTCTCTCGACGTGCCGAGCTTATATGCCACTTTAAAGCGCATGCCGAGGCTCAGGCAGATGAAGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATCGATGATCATTTCTACGAACACGAATGGCCTCCTCTATACCATGACCAGGAACAAGAACAAACTCAGGAGCACGAACAGGAGCCGGAGCTGCAAGAGCATGAACAACTAGTCCAGCAACAGGCCAGCTATGCAACAGCCAGCACTGTGGCAGCACCAACAGCTGCCCGTGGTCGCATTAGTCGCCTCAAGCTCAAAGAGGAATCCACCCAATACATTGTGATCGACGATAAGCAACAGACGGCGGCCGACAATGCCGAATTGCGACAGTTTATGGATTGCGAGGAGCTGAACCAACAACCGCTTGCCACAAACAGCACATCAAACGATGCAACTCACTCCATGCTCGATGGCCAGCTATCATCCGAAGGGGCACAAGAAAGCTTACGCTATCCCGTGCTAGATCCAAGCAAACCTTTCGTCTGCCAACAGTGCGGCTTGGCATTTGCGCGCGAAAAAGCGCTCGTCTCCCACATCAAGAATCATCGCGTGGACTCACCGTTCGAATGCAATCAGTGCCAAGAGATGTTCTGGGACACGTTGAGCCTGCAGGAGCATCAGAAGACGCATCAGTTTGAGGAAAGCAATTCGGAATATGATCCTGCATCTGGCGGCGAGGAATCAGTCAGTGAATCGGATGCAGATCAGCTATACGGCGACTTCTATTGCAGCGAATGCGGCATCTCGTTTCATCGTCAAGATCTGCTGCGCCGCCATGCCAAGCAGCAACACAGCAAGCTGCAAGCGGCAACTGCAACAGATGCCGAGGCCGATGTGGATGGCGTTGAAGTTGGTGTCGAAGATGGAGCTGACGGAGCTGAGAATGCCAAAGATGCACCACACTGTTGTCACACGTGCGGCAAGTCCTTCCCAAGCGTCATCAAACTGCTTGCCCATGCGGAAATTCATAGACGTTTCCCGCCATTTAAATGCGTCCTGTGCGGCGTTAGTTTTTATGAGGAGCAGGCAATTAAACGACATCTGCACACACGCCATCCCCACGAGCTGAAGCCCAATTCGTGTGTGCTCTGTGGCAAGGAGTGTCGCGATCGCAAGGCTCTAATCAAGCATGCCTGGGATCATTCGCGCGAAAAGTGCCACTCGTGCTCCAAGTGCGGCAAGAACTTCCATAACAAGGCGCGTCTGAAGCGGCACATGGCCTCGCATCGCGACAAGTCTGTGGTGTGTGAGGTGTGCCACGAGGAGTTCCCCGATGGACGCACTCTATCCAATCATCGGCATTCGCATAGCACTACGTCGCCGGGTAAACTGTTCCCCTGCCATGAGTGTGGCAAGACCTTTGGTTCGCGCAGCTCACAGCAGATTCATGTGCGCATTCATACGGGTGAACGTCCCTACGGCTGTCGCTATTGCTGGAAGGCCTTCGCCGATGGTGGCACACTGCGCAAGCACGAGCGAATCCATACGGGCGAGAAACCCTATGCCTGCTCGGTTTGTCCGCGTGCCTTTAATCAGCGCGTTGTGCTGCGCGAGCACATACGATCGCATCACTCGGGTTTGGATGCAGCACGTGGCACTTATCACTGCACTGTCTGCTCCGCTGATTTATCCTCATCCAATGACCTCATCAAGCATCTTATCCAACACAGCGATACAAACACGGCCAAGCAACGCCAGCCAATTACTGGTCCGAGGAAGTATAAGCGTCGAAGGAAACTGCAACCGCATGAGATAGCGCACATGCGCGAACGTGAAGAGTATGTCAGTGATATGGAGTACTGCGATTTGGATGTGGAGAACGTCGATGATATGCTGGAGAGTGCAACGGAGCAAACGCCCGTCAAAAAGGAGAAACGAAAACGTAAAACAGTTAGCCAAAACACGGATGGAGCCAATTCGCCCAATAAATCCAGCTCGGATCGCTTGTGGGATGAGAAATTCATGCAGTCAAATGGTGGCACTAACAATGATGATGCCTACAAAAGTATCTTTCACATTGATTCTCTCGTGGTTGTCAATGATACGCCGCTGCAACCAGTGATGCCGACCAAGTCACGACGTGGCGCCAAACAAGCCGAAGAGTCGGCCAAACTGGGAAGTGTTTCAAGCAATGGCAAGAAGAAATCGGGCAAAACAGCGACAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCGTCCCCGCATGATACACACAGAAAAGTCACGTGTGCCGCCAGAGACGACGACGACGAAGAAGTCACGAGGAAGTCGCAGCTATATAACGCGCACCAATACCAATAACGAACTGCAGAGCAGCAGCAGCTTAGTTAAGTCGTCAAGTTCGCGTATTGTGGATGACTACGAGATTATATCACCTGCCACACAGCCACCGAATCAAATCAGTTCCAGTCCCTTGCATATCAAGCAGGAGCAGGAACATCATCAACAGCATCAGCGCGTTCAGCTCATGTATGATGATACGCATTTGCTGATCGATGCAGGACTGTTGCGTGACAAGACCTACGAGAAATTCAATCCGAGCATTGTCAATGATTTGGAGGAGATACTGCGTAGTCCGCTTAAGCATGATCGCAATGCGCGATTGCGCTTCATTAGCGAATCGTCGACAACGCCACAATTTCTGCCCGAGGAGGATCAGAATCTGATTAAGATTGAGCCAACGTCGCCGGATCTGCGCGAAATGGTGGAGAGTCAACAGCGTGTGACTGCCACAGGACACACTACTGCCACATCAATGTCATCCTCATCGTCATCGGCGCGTACTTCGTCACGCCACCTGCGACAACTAACTGCCAATGGATCGGAGACTACACGGACCAGCACTAAACGCAGCGGCAGCAAACAACTCTCAGGTGCAACCAGCTCCAAGAAGTCCACATCCACAACATCTTCCAGCAACAGCAACAGCAATAGCAACAAAACCAATTCGTACCTCAGCAGCTATGGCGTGGACTCGTATAATGTGCAGTGTGTGGCGTCCAGTGCCAACTCGTCGGATGTGAGTTCCGGTTTCTTTTCCATCTCCGAGGTGGTCTCCGCTGCGGATGCCGCCGATGCAGCAGCCAAGGCAGCAGCTGCCTGCAAAACGGAGCGGAGGGCACGTTGCTTTGAATGTGAAATGTGTTCGTCCAATTTTCCTGATCGTGCCCAGCTGCTGGAACACATGCATATACACATCTAG
Protein Sequence: MNNQDYGGIHWIQQESSAADDTDSEVTAAYLVNGNATDEDLDHMAAENLIFMRDGQLSEIIAANEAGGTVLITDSGNVAYAESFDDDAQVVTEEIITDDWVQHQGAERVEIAAEQIAGNGSSQELLDMQQNEYMAMRPYPCDFCSRRFRKKASLNNHMLAHQNDRPHLCKLCGGRFSRRAELICHFKAHAEAQADEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXIDDHFYEHEWPPLYHDQEQEQTQEHEQEPELQEHEQLVQQQASYATASTVAAPTAARGRISRLKLKEESTQYIVIDDKQQTAADNAELRQFMDCEELNQQPLATNSTSNDATHSMLDGQLSSEGAQESLRYPVLDPSKPFVCQQCGLAFAREKALVSHIKNHRVDSPFECNQCQEMFWDTLSLQEHQKTHQFEESNSEYDPASGGEESVSESDADQLYGDFYCSECGISFHRQDLLRRHAKQQHSKLQAATATDAEADVDGVEVGVEDGADGAENAKDAPHCCHTCGKSFPSVIKLLAHAEIHRRFPPFKCVLCGVSFYEEQAIKRHLHTRHPHELKPNSCVLCGKECRDRKALIKHAWDHSREKCHSCSKCGKNFHNKARLKRHMASHRDKSVVCEVCHEEFPDGRTLSNHRHSHSTTSPGKLFPCHECGKTFGSRSSQQIHVRIHTGERPYGCRYCWKAFADGGTLRKHERIHTGEKPYACSVCPRAFNQRVVLREHIRSHHSGLDAARGTYHCTVCSADLSSSNDLIKHLIQHSDTNTAKQRQPITGPRKYKRRRKLQPHEIAHMREREEYVSDMEYCDLDVENVDDMLESATEQTPVKKEKRKRKTVSQNTDGANSPNKSSSDRLWDEKFMQSNGGTNNDDAYKSIFHIDSLVVVNDTPLQPVMPTKSRRGAKQAEESAKLGSVSSNGKKKSGKTATXXXXXXXXXXXXXXXXXRPRMIHTEKSRVPPETTTTKKSRGSRSYITRTNTNNELQSSSSLVKSSSSRIVDDYEIISPATQPPNQISSSPLHIKQEQEHHQQHQRVQLMYDDTHLLIDAGLLRDKTYEKFNPSIVNDLEEILRSPLKHDRNARLRFISESSTTPQFLPEEDQNLIKIEPTSPDLREMVESQQRVTATGHTTATSMSSSSSSARTSSRHLRQLTANGSETTRTSTKRSGSKQLSGATSSKKSTSTTSSSNSNSNSNKTNSYLSSYGVDSYNVQCVASSANSSDVSSGFFSISEVVSAADAADAAAKAAAACKTERRARCFECEMCSSNFPDRAQLLEHMHIHI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01320605;
90% Identity: -
80% Identity: -