Spal001222.1
Basic Information
- Insect
- Scaptomyza pallida
- Gene Symbol
- bab1
- Assembly
- GCA_018152965.1
- Location
- JAECXP010000080.1:7529832-7532564[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 7.6e-18 2e-14 53.0 0.0 1 43 55 98 55 100 0.95
Sequence Information
- Coding Sequence
- ATGATGGAGAACTCGCATGCTTGGATGGGCGCCACTGGCTCAACGCTAGCAGCAGACAGCTATCAGTATCAGTTGCAATCAATGTGGCAAAAATGCTGGAACACCAATCAAAATCTTATGCATCATATGCGATTTCGCGAACGTGGACCTCTGAAATCCTGGCGACCCGAAACGATGGCCGAGGCCATCTTTAGTGTATTGAAGGAGGGACTTTCGCTATCGCAGGCAGCCCGCAAATATGATATACCATATCCGACATTTGTGCTATATGCAAATCGAGTGCATAATATGCTGGGACCCTCGATTGATGGTGGGCCTGATTTAAGGCCAAAGGGGCGGGGGCGGCCGCAGCGCATATTGCTGGGAATTTGGCCAGATGAGCATATTAAGGGCGTCATCAAGACGGTTGTTTTTCGCGATACCAAGGACATGAAGGACGATAGCCTGGCCGCACACATGCCACCATACGGTCGGCATTCGCCCGTGTTTTCTTTGCAGGACATGGCGCTGAATTATCCAGGCGCTAGTGGCGGCATGCCCGGCAGCGGCGCCGCCACCCTCAGCGCCTTGGCCTGTCCAAATGGCATGGGCAGTGGAGCTGGTGGAGCAGGTGGCCCGAGTGGTGCCGGCGGCGGCGTCGGTGGACCTGTTGGTGCCGACCAGCAAATGTCACAGGAACAAATGTCGGCAGTGGCTGCCGTCGCGCACAACATACGCCAGCAGATGCAAATGGCTGCCGCAGCGCAGCATCAGCACGGGGAGGCGGGGCCGCCGCCGCCGCCAGGACTGTTCCAATTGCCGCCGCATTTGGCGGGTGGACCGGGCGGGCGGGCAAGCATATCGCCGGCATTGAGCAGCGGCTCGAATCCATCGTTGGGTCCGCCGCCGCGACATGCGCCCTCGCCCTGCGGTCCCGCCGGCCTCATGCCGAATCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTGAGCCTGTCCAAGTCCAAGAGCAGTCCGCTTCGCAGCGAGACACCAAGATTGCATTCCCCGCTCGCAGATTTGGGTCTGGAGCTGGGCTTTAAGCGTGAATACTCACCCAGCCGGCTCTTTGCCGAAGATCTGGCCGAACTTGTGGGTGTCGGCAGCAATGTGGGCATCTCCTCCTCCACCTCGGCATCCTCAACAACAACAACAACGCCAGCAACGGGAGCTGCAGTGGCTGCTGTCTCCACTGATATCTGTTCCAGCAGCACGGGCAGCATCAAAGTGGAACCCATCACAACCAGCAGCGAGTAG
- Protein Sequence
- MMENSHAWMGATGSTLAADSYQYQLQSMWQKCWNTNQNLMHHMRFRERGPLKSWRPETMAEAIFSVLKEGLSLSQAARKYDIPYPTFVLYANRVHNMLGPSIDGGPDLRPKGRGRPQRILLGIWPDEHIKGVIKTVVFRDTKDMKDDSLAAHMPPYGRHSPVFSLQDMALNYPGASGGMPGSGAATLSALACPNGMGSGAGGAGGPSGAGGGVGGPVGADQQMSQEQMSAVAAVAHNIRQQMQMAAAAQHQHGEAGPPPPPGLFQLPPHLAGGPGGRASISPALSSGSNPSLGPPPRHAPSPCGPAGLMPNLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSLSKSKSSPLRSETPRLHSPLADLGLELGFKREYSPSRLFAEDLAELVGVGSNVGISSSTSASSTTTTTPATGAAVAAVSTDICSSSTGSIKVEPITTSSE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01324034; iTF_01323303; iTF_00534504; iTF_01322568;
- 90% Identity
- iTF_01324034;
- 80% Identity
- -