Smon004809.1
Basic Information
- Insect
- Scaptomyza montana
- Gene Symbol
- bab1
- Assembly
- GCA_018904305.1
- Location
- JAEIGR010000006.1:1846903-1849690[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 7.5e-18 2.1e-14 53.1 0.0 1 43 55 98 55 100 0.95
Sequence Information
- Coding Sequence
- ATGATGGAGAGCTCGCACGCTTGGATGGGCGCCACTGGCTCAACGCTGGCAGCAGACAGCTATCAGTATCAGCTGCAGTCGATGTGGCAAAAATGCTGGAACACCAATCAGAATCTAATGCATCATATGCGATTTCGTGAACGAGGCCCTCTGAAATCCTGGCGACCCGAAACAATGGCCGAGGCCATTTTTAGTGTGTTAAAGGAGGGACTTTCGCTATCGCAGGCAGCCCGCAAATATGATATACCATATCCCACATTTGTGCTCTATGCAAATCGAGTGCATAATATGCTGGGACCGTCGATTGATGGTGGGCCCGATTTGCGGCCGAAGGGACGCGGGCGGCCGCAGCGCATATTGCTGGGAATTTGGCCAGATGAGCATATTAAGGGCGTCATCAAGACGGTTGTTTTTCGCGATAACAAGGATATGAAGGACGATAGCTTGGCCGCTCACATGCCACCGTATGGTCGGCATTCGCCCGTGTTTTCCTTGCAGGATATTGCGCTCAGCTATCCGGGCGCTAGTGGCGGCATGCCGGGCAGCGGTGCTGCCACCCTCAGCGCCTTGGCCTGTCCAAATGGCATGGGAAGTGTACCAGGAGCAGGTGGTCCGAGTGGCGCAGGCGGCGGTGGAGCTGTCGGTGCCGACCAGCAAATGTCGCAGGAGCAAATGTCGGCAGTGGCTGCCGTCGCGCACAACATACGCCAGCAGATGCAAATGGCTGCCGCAGCGCAGCATCAGCACGGGGAGGCGGGGCCGCCGCCGCCAGGACTGTTCCAATTGCCGCCGCATCTGGCGGGTGGACCGGGCGGGCGGGCAAGCATATCGCCAGCACTGAGCAGCGGTTCCAATCCATCGTTGGGCCCGCCGCGACATGCGCCCTCGCCCTGCGGTCCCGCCGGCCTCATGCCGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTGGGCCTGCTCCATGCGGAGAAAACAAAGTCAAAGAGCAGCCCGCTTCGCAGCGAAACACCCAGTCTGCATTCTCCGCTGGCGGAGTTGGGTCTGGAGTTGGGCTACAAGCGAGAATACTCACCTAGCCGGCTATTCGCTGACGATCTGGCCGAGCTTGTTGGCGTTAGCAGCAACATTGGCATCTCCTCCTCCACCTCGGCATCCTCAACAACTACAGCAACGACGCCAGCAGCTGGAGTAGCAGCGGGCGCCGGCGCTGAAGGAATCACCACTGAAATCTGTTCCAGCAGCAGTGGCAGCATCAAAGTGGAACCCATCACAACCAGCAACGAGTAG
- Protein Sequence
- MMESSHAWMGATGSTLAADSYQYQLQSMWQKCWNTNQNLMHHMRFRERGPLKSWRPETMAEAIFSVLKEGLSLSQAARKYDIPYPTFVLYANRVHNMLGPSIDGGPDLRPKGRGRPQRILLGIWPDEHIKGVIKTVVFRDNKDMKDDSLAAHMPPYGRHSPVFSLQDIALSYPGASGGMPGSGAATLSALACPNGMGSVPGAGGPSGAGGGGAVGADQQMSQEQMSAVAAVAHNIRQQMQMAAAAQHQHGEAGPPPPGLFQLPPHLAGGPGGRASISPALSSGSNPSLGPPRHAPSPCGPAGLMPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLGLLHAEKTKSKSSPLRSETPSLHSPLAELGLELGYKREYSPSRLFADDLAELVGVSSNIGISSSTSASSTTTATTPAAGVAAGAGAEGITTEICSSSSGSIKVEPITTSNE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01324824;
- 90% Identity
- iTF_01322568; iTF_01324824;
- 80% Identity
- -