Spal000540.1
Basic Information
- Insect
- Scaptomyza pallida
- Gene Symbol
- Bro
- Assembly
- GCA_018152965.1
- Location
- JAECXP010000080.1:3245274-3245912[+]
Transcription Factor Domain
- TF Family
- CBF
- Domain
- CBF_beta domain
- PFAM
- PF02312
- TF Group
- Beta-Scaffold Factors
- Description
- Core binding factor (CBF) is a heterodimeric transcription factor essential for genetic regulation of hematopoiesis and osteogenesis. The beta subunit enhances DNA-binding ability of the alpha subunit in vitro, and has been show to have a structure related to the OB fold [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 4.4e-74 4.1e-70 234.8 0.8 1 153 33 181 33 191 0.95
Sequence Information
- Coding Sequence
- ATGCATCATCACCAAAATATTGGAGATGCTGGCATAATGCCACCCTACGAAGCCATGGCAATGTACGAACAGCCAAAACCACGTTTTATATTCAAAATGCCGCGCGTTGTACCCGATCAGAAATCCAAATACGAGAGTGATGAGTTATTCCGTCGACTAAGTCGGGAGAGCGAGGTTCGTTACACGGGCTATCGCGAACGAGCCATAAATGAGCGTCGGATGCGTTTTGTGACAGACTGCCGGAAGGGCTATGCTGAGCTCTCATTTGTGGCATCGGGCACCAATGTTCAACTGTATTTCAATGCCAATCATAATCCCTATGCCCAGGAGCAGGAGTGTGATTTCGAAAAGGAACGCGGCAAAGTTCACTTGCGCTCCAACTTCATTATGAACGGGGTCTGTGTGCGATTCCGTGGCTGGTTGGACTTGGATCGGCTGGATGGGGTTGCGTGTTTGGAGTATGATGAAGGACGTGCCCTGCAGGAGGATGCCCAGCTGTGCGAACAAATCGAAAGTCACAATCAACGCATTAACGATTCGAAGCGTATGTATGCACATACGCCACCCCAGGATATAATGCGGCGTGGTCCTCCAGGACCAGGACCAGGACCCGTTACTGGACCACCTATGGGCTGGTGA
- Protein Sequence
- MHHHQNIGDAGIMPPYEAMAMYEQPKPRFIFKMPRVVPDQKSKYESDELFRRLSRESEVRYTGYRERAINERRMRFVTDCRKGYAELSFVASGTNVQLYFNANHNPYAQEQECDFEKERGKVHLRSNFIMNGVCVRFRGWLDLDRLDGVACLEYDEGRALQEDAQLCEQIESHNQRINDSKRMYAHTPPQDIMRRGPPGPGPGPVTGPPMGW
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00582027;
- 90% Identity
- iTF_01326155;
- 80% Identity
- -