Smon005327.1
Basic Information
- Insect
- Scaptomyza montana
- Gene Symbol
- Aef1
- Assembly
- GCA_018904305.1
- Location
- JAEIGR010000006.1:6444372-6445455[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 0.0011 10 6.4 0.1 20 49 43 72 37 75 0.85 2 4 6.8e-06 0.065 13.5 0.0 21 52 72 103 69 104 0.89 3 4 0.0079 76 3.6 0.1 21 48 100 127 98 131 0.85 4 4 2.1e-05 0.2 11.9 0.1 21 47 128 154 124 161 0.88
Sequence Information
- Coding Sequence
- ATGATGCATATCAAGAGGCTTGTGGGTGAATCGCACTACGTCAGCAATGGGCATTCGGGCAATGAGCATTCGGGCGAGGGTAACGGATCGACTGGCAGCGGCGGTGGCGGTGGTGGTAGCGGTCGGGAACATGAGAAACCGTTCCATTGCACAGTGTGCGATCGTCGATTTCGTCAGTTAAGCACACTGACCAATCATGTGAAGATCCATACCGGTGAGAAGCCCTACAAATGCAACGTTTGTGATAAGACGTTCCGTCAATCGTCCACGCTGACGAATCATTTGAAAATTCATACCGGTGAAAAGCCGTACAATTGCAACTACTGTCCCAAGCATTTCCGTCAGCTGAGCACATTGGCCAACCACGTCAAGATTCATACGGGTGAAAAGCCGTTCGAATGCGTCATATGCAAGAAACAATTCCGGCAATCGAGTACGCTCAACAATCACATAAAGATCCATGTCATGGACAAGGTCTACGTTCCTGTCAAGATCAAAACGGAGGAGGACGAGGGGTGA
- Protein Sequence
- MMHIKRLVGESHYVSNGHSGNEHSGEGNGSTGSGGGGGGSGREHEKPFHCTVCDRRFRQLSTLTNHVKIHTGEKPYKCNVCDKTFRQSSTLTNHLKIHTGEKPYNCNYCPKHFRQLSTLANHVKIHTGEKPFECVICKKQFRQSSTLNNHIKIHVMDKVYVPVKIKTEEDEG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01324367;
- 90% Identity
- iTF_01324367;
- 80% Identity
- iTF_01324367;