Basic Information

Insect: Scaptomyza montana
Gene Symbol: -
Assembly: GCA_018904305.1
Location: JAEIGR010000004.1:3743180-3746101[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.0075 0.58 10.8 0.3 2 23 19 40 18 40 0.96

2 12 0.0018 0.13 12.8 1.0 1 23 46 69 46 69 0.93

3 12 0.00051 0.039 14.5 2.2 1 23 115 137 115 137 0.93

4 12 0.34 26 5.7 2.0 2 23 424 446 423 446 0.94

5 12 0.015 1.1 9.9 0.9 1 23 471 493 471 493 0.98

6 12 0.16 12 6.7 3.0 1 21 501 522 501 525 0.89

7 12 0.23 18 6.2 2.2 2 23 530 552 529 552 0.94

8 12 0.00031 0.023 15.2 0.2 2 21 565 584 564 585 0.93

9 12 0.001 0.08 13.5 1.0 1 23 593 615 593 615 0.98

10 12 1.4e-06 0.0001 22.6 2.9 1 23 621 644 621 644 0.98

11 12 3.7e-05 0.0028 18.1 1.4 1 23 650 672 650 672 0.98

12 12 0.00034 0.026 15.1 2.9 1 23 678 700 678 700 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.0075	0.58	10.8	0.3	2	23	19	40	18	40	0.96
2	12	0.0018	0.13	12.8	1.0	1	23	46	69	46	69	0.93
3	12	0.00051	0.039	14.5	2.2	1	23	115	137	115	137	0.93
4	12	0.34	26	5.7	2.0	2	23	424	446	423	446	0.94
5	12	0.015	1.1	9.9	0.9	1	23	471	493	471	493	0.98
6	12	0.16	12	6.7	3.0	1	21	501	522	501	525	0.89
7	12	0.23	18	6.2	2.2	2	23	530	552	529	552	0.94
8	12	0.00031	0.023	15.2	0.2	2	21	565	584	564	585	0.93
9	12	0.001	0.08	13.5	1.0	1	23	593	615	593	615	0.98
10	12	1.4e-06	0.0001	22.6	2.9	1	23	621	644	621	644	0.98
11	12	3.7e-05	0.0028	18.1	1.4	1	23	650	672	650	672	0.98
12	12	0.00034	0.026	15.1	2.9	1	23	678	700	678	700	0.95

Sequence Information

Coding Sequence: ATGGCTACGCAGAAAATGCTGGTGGAAATAACAACGGATGGCATTCCAAAGCTTCACTGCCCCGTCTGCAACAAAGCACTCGTTTCGTTGGCCGGCTACGTTAAGCATGTAAAGAAACATGAGCCGCCGGGCGGCTTTCTGTGCCGCTACTGTGATGCCCCATATTGCAATGAGGAGGAACTAAAACAGCATATAAAGGAGACTCACAGCGCCTTTGTGTGCCGCCTGTGCGTAAGCAACGTAGTCATATTCAGCAGCTTAGAGGAGCATGATGCACACATCGAGGAGCAGCATCAGGATAGCAAGTTCAATGTTGGACTTGAACCCGCCAGCGAGATGCCTTTTAAATGTGAGATTTGTGGCAAATGTTTTGCGGATCGCGAGAGCAGCCTAAAACATCGTTCCGAACACGACGAGGAACTTCCCGTTGAATGCAAATGCTGCTCCACGCGCTTCTCATGCATTTCCAGCCTGACCAAACATCAGCGCAGACGTCCAGACACTTGCGGTCGGGATGTGACAAACAAAAATCGCAAACTATCCGCTTCATCAGAGCCACCAAAAGACGGTGTCAAGAAAAAACGCGGCCGACCAAGAAAAATCCCAGTTGCTGATCTTTCGGATAGCGACGATGATGTGCCGCTAGCAAGCAGGTTGAAAGTACCGGCACCTGTAAAGCAAGAGTTCCTTAGCAGCCAGGAGCTAAGCGATTCAGCCGAGGAATATCCAGACTTTGAGCCCAACAGCAGCGATGACGAAGCGGATGCAACACGATTCAAGCTGCCGACGCCAGCGAAGGTTAAACAGGAGGCCATCGATCCAGACTTTGAGTATCAGGATGCCAGTTTGTTTGTAAAGGCAGAGAGTGGCGCCTTGGACATCTATAGCAATGAGAAGGACAAGTTGCTAGATGTATTGCTTAATCAGGATGAGGGCCTAAAGCCCTTTGAGAATCTTAAAGTGGAGCATGCCACAGGCATTTTGGATGAGATTGCAGCGGTTCCGATGCTTAAACAGAATGGCACAGAACACATGGAAGAGGATGTGCTGGCGCTCAGAGAAACAGACGATGAGGATGATGATGACGACGACGATAAGGAGTTTATTGCGGAGCCGCGTAGAAGAAAAACTAATGTTGTTAAGCGCAAATATCGCAAACGTGGCTCCCCGCCAGTAGACAACACTGCAGGTCCTCGGCGTGTGGCCAAAATTACGAAAAAAGAGCTGAAGGAGCGGCTTAAAATGATCAGCAAAATGGAAAAGACCTGGAAGTGTCCGCACTGTGTGAAAATCTATCACATACGGAAGCCGTATGAGAAGCATTTGCGTGATGATCACAAGCTTAGTGAGGGGGAAATCAAAGAGCTGTTCCAGGATGCGGACGCTCATGCCAAGCTAGACGATGAGGTGTTCAAATGCAAGATATGCAGTAAAATATATTTGGTGGAGAAACGTCTAGAGACGCACATGAAAGTACATGGCAAGGATGGTAGCCTTACCTTCAAGTGTCCGTGCTACTGCAATCTGTTCTTTGCAAGCAAGGAGCTGGCCACCCAGCACGCCCATGATCTGCACAAAGAACTGCTCTACTGCGAGAAGTGTGACAAGTATATGACCGGCCATGACAGTCTCAAGAATCACGAGAAGAACTATCATTCTCGCAAGGAACCGCGCAATCTTCCGCGTAATCTCATCTGCGACAAGTGTGGCAAGAAGTTCACTGGACGCACTTCGCTCTCGGATCACGTTCGTTCCGAATGCGGTCGTATGCCTTTATATGAGTGCAAAGTCTGTCACAAGCGACTCTCCACAGCGGGCATATTAAAAACCCATATGCTCCTCCATCAATCGGAGACGCCCTTTCAGTGCGATAAATGCGGCAAAACGTTCAAGGTGAAGGCACAGTATAAATCTCATCTAAAAACGCGTCACACGGACTACAAGCCATACAAATGCCACCTCTGCCCTAAGGAGTATCCGTATCGCGAGAGCTTGTTGACTCACATGACTGTCCACACAGGCATCAAACGTTTTCTATGCAACAACTGCGGCAAGCGCTTCACATGCATCTCCAATTTGCAGGCGCATCGCAAAGTGCATGCCGACACCTGCGGCCAGTTGCCGCTTAACGCAAAGGCCACACAATACATGGGCGTGCAGCGGGGCAAGCTACTGATGGGCGCCAAGCCGGAGGCGGGCATGGAGTACGAGGAGACAAAAACGCTGATTGCGCAGGATGTCATCGATCGAGATATGCCGATGGCGCAGGAGCTTAACTTTCCATCCGATGGCAGTGCACCGCTGGCGACTGTGCCGCTTAACTATGCCTCGTCGCATCTCGTACCGCATATTGTGCTGCAAACAATGCAGGCGGAGGCGCGCAAATAG
Protein Sequence: MATQKMLVEITTDGIPKLHCPVCNKALVSLAGYVKHVKKHEPPGGFLCRYCDAPYCNEEELKQHIKETHSAFVCRLCVSNVVIFSSLEEHDAHIEEQHQDSKFNVGLEPASEMPFKCEICGKCFADRESSLKHRSEHDEELPVECKCCSTRFSCISSLTKHQRRRPDTCGRDVTNKNRKLSASSEPPKDGVKKKRGRPRKIPVADLSDSDDDVPLASRLKVPAPVKQEFLSSQELSDSAEEYPDFEPNSSDDEADATRFKLPTPAKVKQEAIDPDFEYQDASLFVKAESGALDIYSNEKDKLLDVLLNQDEGLKPFENLKVEHATGILDEIAAVPMLKQNGTEHMEEDVLALRETDDEDDDDDDDKEFIAEPRRRKTNVVKRKYRKRGSPPVDNTAGPRRVAKITKKELKERLKMISKMEKTWKCPHCVKIYHIRKPYEKHLRDDHKLSEGEIKELFQDADAHAKLDDEVFKCKICSKIYLVEKRLETHMKVHGKDGSLTFKCPCYCNLFFASKELATQHAHDLHKELLYCEKCDKYMTGHDSLKNHEKNYHSRKEPRNLPRNLICDKCGKKFTGRTSLSDHVRSECGRMPLYECKVCHKRLSTAGILKTHMLLHQSETPFQCDKCGKTFKVKAQYKSHLKTRHTDYKPYKCHLCPKEYPYRESLLTHMTVHTGIKRFLCNNCGKRFTCISNLQAHRKVHADTCGQLPLNAKATQYMGVQRGKLLMGAKPEAGMEYEETKTLIAQDVIDRDMPMAQELNFPSDGSAPLATVPLNYASSHLVPHIVLQTMQAEARK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00506346;
90% Identity: iTF_01325858;
80% Identity: -