Smon012525.1
Basic Information
- Insect
- Scaptomyza montana
- Gene Symbol
- lrrfip2
- Assembly
- GCA_018904305.1
- Location
- JAEIGR010000002.1:227830-238665[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 4.1e-35 4e-31 108.5 6.7 1 93 30 124 30 127 0.95
Sequence Information
- Coding Sequence
- ATGGACACCGCAAATGCCACCGGTCGGCGGCGAAACAATTTATGTGTTAACGCCGAGGATAATGCACTCGATCAAATAACAAAGGAGGCCGAAGCGCGTTTGGCAGCTCGTCGACAAGCCCGTGCCGAAGCTCGTGAGATTCGTATGCGGGAGCTTGAGCGGCTACAAAAAGAGCAGGAACAAAATGCTGACCGCGCATTTGACATGCACACAAGTGGCAGTATTATTATAGACACTTTTACATCACACCCCGCACGTACAACTTACGGTGGTCTCCTAAACTTAACACGATCAACAGCTTCACGACGCAGCAGCGAAGATTCATTGGAAGACGATGGTCAAAGTTTGCGTGATGTTAAACACGATCTTAAAGTAGGTACCCACTTTTAA
- Protein Sequence
- MDTANATGRRRNNLCVNAEDNALDQITKEAEARLAARRQARAEAREIRMRELERLQKEQEQNADRAFDMHTSGSIIIDTFTSHPARTTYGGLLNLTRSTASRRSSEDSLEDDGQSLRDVKHDLKVGTHF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01322636; iTF_01321913; iTF_00802835;
- 90% Identity
- iTF_01321913;
- 80% Identity
- -