Smon005550.1
Basic Information
- Insect
- Scaptomyza montana
- Gene Symbol
- -
- Assembly
- GCA_018904305.1
- Location
- JAEIGR010000085.1:246365-257242[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 2.5e-12 6.8e-09 35.4 0.0 1 41 168 209 168 212 0.90 2 4 1.5e-14 4.1e-11 42.5 0.1 2 39 223 260 222 263 0.94 3 4 3.3e-18 9.2e-15 54.2 0.0 1 45 277 322 277 322 0.98 4 4 3.4e-20 9.4e-17 60.6 0.0 1 43 329 372 329 373 0.97
Sequence Information
- Coding Sequence
- ATGACTAGTTTAGGCATGGGCATGAATGGTGGTCTATTGGGCGTCCCCATGGGTTTTCTGGACTTTACACCGGAACCACCAGCACCATCGGCCACACCAGTCACCGTCACCGAACATGTCGATCTGTCGTGCAACCCCAGCACCGATACACGCGATCTATCAAATCCCACCGAACCGCTCGACATAGACAATCATTTGGCTCAGCAAATTCATCGGCTTGATCAATCTCCCATGCATTCAATAGCGCATCATCATGCTACCGGTGACGAGAGCAACTCGAATCTGGTGCAACATATCAAAAGCGAGCCGGGTATGATTATCACGCCAGAGATTGTCAACATGATGTCCACCGGACATATGGACATGTATAACTCGGATACGAGCGAAGACTCAATGATGATCGCAAACGGTTCGCCGCACGATCAGAATGAGCCGCATTATACGAATTTGGATCAGCAGCACGGCGGATTGGGTGGTCAGTTTAATGGTCCCAAAGCTTGGACACAAGATGATATGAATTCAGCTTTAGATGCATTAAAGAATCAAAACATGAGCCTGACGAAAGCATCTGCCATTTATGGCATACCATCAACGACCTTATGGCAGCGTGCACATCGTTTGGGCATCGAAACGCCTAAGAAGGAGGGCGGCACCAAATCGTGGAACGAGGATGCCTTGCAAAATGCCTTGGAGGCATTGCGTTCGGGTCAAATATCGGCAAATAAAGCATCAAAAGCGTTTGGTATACCCTCATCGACGCTCTACAAGATTGCGCGTCGCGAGGGCATACGTCTGGCGGCGCCATTCAATGCCGCACCAACCACGTGGACACCCGAGGACTTGGAGCGTGCATTAGAGGCGATACGCGCTGGCAATACGTCTGTACAAAAAGCAAGTGCTGAATTTGGCATACCAACAGGAACACTTTATGGACGCTGCAAACGGGAAGGCATCGAACTATCACGTTCGAATCCAACTCCTTGGTCCGAGGACGCAATGAATGAGGCATTAAACTCAGTGCGCGTCGGTCAAATGTCCATCAACCAGGCGGCTATTCACTACAACCTGCCATACAGTTCACTCTACGGACGCTTTAAGCGTGGGAAATACGATGTTGTGGCTAGTACCACTGGTGTCTCGCATAATAATACCTCGGGTAATACGAGCGGCAGCATTGAGATAATCGAGCATAGCCAGGAAAATTCGGTAGGTTACAGGTGTCGTATGCGGTGTCGTTTGTGA
- Protein Sequence
- MTSLGMGMNGGLLGVPMGFLDFTPEPPAPSATPVTVTEHVDLSCNPSTDTRDLSNPTEPLDIDNHLAQQIHRLDQSPMHSIAHHHATGDESNSNLVQHIKSEPGMIITPEIVNMMSTGHMDMYNSDTSEDSMMIANGSPHDQNEPHYTNLDQQHGGLGGQFNGPKAWTQDDMNSALDALKNQNMSLTKASAIYGIPSTTLWQRAHRLGIETPKKEGGTKSWNEDALQNALEALRSGQISANKASKAFGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLERALEAIRAGNTSVQKASAEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMNEALNSVRVGQMSINQAAIHYNLPYSSLYGRFKRGKYDVVASTTGVSHNNTSGNTSGSIEIIEHSQENSVGYRCRMRCRL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01322562;
- 90% Identity
- iTF_01322562;
- 80% Identity
- -