Sgra003774.1
Basic Information
- Insect
- Scaptomyza graminum
- Gene Symbol
- -
- Assembly
- GCA_018901835.1
- Location
- JAEIFL010000282.1:207504-213112[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 3.7e-12 7e-09 35.0 0.0 1 41 170 211 170 214 0.90 2 4 2.2e-14 4.2e-11 42.2 0.1 2 39 225 262 224 265 0.94 3 4 5e-18 9.5e-15 53.8 0.0 1 45 279 324 279 324 0.98 4 4 5.1e-20 9.7e-17 60.2 0.0 1 43 331 374 331 375 0.97
Sequence Information
- Coding Sequence
- ATGACTAGTTTAGGCATGGGCATGAATGGCGGTCTGTTGGGCGTGCCCATGGGCTTTCTGGACTTCACACCGGAACCACCAGCACCATCGGCCACACCAGTCACCGTCACCGAACATGTCGATCTGTCGTGCAACCCCAGCACCGATACACGCGATCTATCAAATCCCACCGAACCGCTCGACATAGACAATCATTTGGCTCAGCAAATTCATCGGCTCGATCAATCTCCCATGCATTCGATAGCGCATCATCATTCAACCGGTGACGAGAGCAACTCGAATCTGGTACAACATATCAAAAGCGAGAATGAGCCGGGTATGATTATCACGCCAGAGATTGTCAACATGATGTCCACCGGACATATGGACATGTATAACTCGGATACGAGCGAAGACTCAATGATGATCGCTAACGGTTCGCCGCACGATCAGAATGAGCCGCATTATACGAATTTGGACCAGCAGCACGGCGGATTGGGTGGTCAGTTTAATGGTCCCAAAGCTTGGACACAAGATGATATGAATTCAGCTTTAGATGCATTAAAGAATCAAAACATGAGCCTGACGAAAGCATCTGCCATTTACGGCATACCATCCACGACCTTATGGCAGCGTGCACATCGTTTGGGCATCGAAACGCCTAAGAAGGAGGGCGGCACCAAATCGTGGAACGAGGATGCCTTGCAAAATGCCTTGGAGGCATTGCGTTCGGGTCAAATATCGGCAAATAAAGCATCAAAAGCGTTTGGTATACCCTCATCAACGCTCTACAAGATAGCGCGTCGCGAGGGCATACGTCTGGCGGCGCCATTCAATGCCGCACCAACCACATGGACACCCGAGGACTTGGAACGTGCATTAGAGGCGATACGCGCGGGCAATACGTCTGTACAAAAAGCAAGTGCTGAATTTGGCATACCGACAGGAACACTTTATGGACGCTGCAAACGGGAAGGAATCGAACTATCACGTTCGAATCCAACTCCTTGGTCCGAGGATGCAATGAACGAGGCATTAAACTCAGTGCGCGTCGGTCAAATGTCCATCAACCAGGCGGCCATTCACTACAACCTGCCATACAGTTCACTCTACGGACGCTTTAAGCGTGGAAAATACGATGTGGTGGCTAATACCTCTGGTGTCTCGCTTAATAATACCTCGGGTAATACGACCGGCAGCATTGAGATAATCGAGCATAGCCAGGAAAATTCGTTGCATATGTTACAGCAACAGTTCCCGTATAGTCCGTCGCCCCATCCGCCGACGCCTCAGCATCATAGTACGCCCCAGCATCACAGTTCGCAGCAGGGACCGCCGACACCGCAACAGATGCAACAGCATGTGGTGCACATGCAACAGCAGTCGCCGCACCAGGCGCACCACCAACAACAGCAGCAGCACATGCAACAGCAACAGGATGTGGTGACATCAAGCAGCCAGGTGGTGCATAGCCAGCAACAGCAACAGCAGCTTCAACAGATTTATCAGCATCACGACACGCCCGAGCGTAGTTGA
- Protein Sequence
- MTSLGMGMNGGLLGVPMGFLDFTPEPPAPSATPVTVTEHVDLSCNPSTDTRDLSNPTEPLDIDNHLAQQIHRLDQSPMHSIAHHHSTGDESNSNLVQHIKSENEPGMIITPEIVNMMSTGHMDMYNSDTSEDSMMIANGSPHDQNEPHYTNLDQQHGGLGGQFNGPKAWTQDDMNSALDALKNQNMSLTKASAIYGIPSTTLWQRAHRLGIETPKKEGGTKSWNEDALQNALEALRSGQISANKASKAFGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLERALEAIRAGNTSVQKASAEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMNEALNSVRVGQMSINQAAIHYNLPYSSLYGRFKRGKYDVVANTSGVSLNNTSGNTTGSIEIIEHSQENSLHMLQQQFPYSPSPHPPTPQHHSTPQHHSSQQGPPTPQQMQQHVVHMQQQSPHQAHHQQQQQHMQQQQDVVTSSSQVVHSQQQQQQLQQIYQHHDTPERS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01324029;
- 90% Identity
- iTF_01324029;
- 80% Identity
- -