Basic Information

Insect: Scaptomyza hsui
Gene Symbol: ush
Assembly: GCA_018152825.1
Location: JAECXO010000280.1:3905492-3922129[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.046 3.8 8.3 0.0 1 20 203 222 203 224 0.89

2 9 0.00027 0.022 15.3 0.8 1 23 282 304 282 304 0.98

3 9 0.048 4 8.2 1.0 2 21 353 372 353 373 0.92

4 9 0.046 3.8 8.3 2.9 2 21 750 769 749 770 0.93

5 9 0.0086 0.71 10.6 0.0 3 21 820 838 818 839 0.91

6 9 0.0062 0.51 11.0 0.0 2 23 911 932 910 932 0.98

7 9 0.0036 0.3 11.8 1.3 1 23 938 960 938 960 0.99

8 9 0.0013 0.11 13.2 1.9 1 23 1030 1053 1030 1053 0.96

9 9 0.29 24 5.8 0.7 2 20 1163 1181 1162 1183 0.91

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.046	3.8	8.3	0.0	1	20	203	222	203	224	0.89
2	9	0.00027	0.022	15.3	0.8	1	23	282	304	282	304	0.98
3	9	0.048	4	8.2	1.0	2	21	353	372	353	373	0.92
4	9	0.046	3.8	8.3	2.9	2	21	750	769	749	770	0.93
5	9	0.0086	0.71	10.6	0.0	3	21	820	838	818	839	0.91
6	9	0.0062	0.51	11.0	0.0	2	23	911	932	910	932	0.98
7	9	0.0036	0.3	11.8	1.3	1	23	938	960	938	960	0.99
8	9	0.0013	0.11	13.2	1.9	1	23	1030	1053	1030	1053	0.96
9	9	0.29	24	5.8	0.7	2	20	1163	1181	1162	1183	0.91

Sequence Information

Coding Sequence: ATGATCAGCAGTCAGCCAGCAACAACAACAACCATTGCAACAGCAACAACAATCAAAGGTGATTGTTCCGATACCACAGAAGAGATGACCGTCGACAGCAGAGATTCCAAAGAATTGGGCGCACATGAGCTGAGCGAGGAAAAGCAGCAACAACACCTCGAGGATCAGCCCGAGGACGAGCAGTTAGAGCAGCATTCCAACAACTCTTCCGCCTCCCAGCCTCCCATCGAGACTGACATGGAGCAGGAGCTAAACGATGCTGCCCACGAGGACTCCAGCGAGCAAAAGCTGGCGGAGAACACGACGACAACGACAACGCCGCCAAGGAGCCCAACGCCCGAGCTGGTGCTGAAGTTGGAGCGAGCTGATACGCCGCCCTCAGTGCCAGCCACGCCCAGTCCGCCACCTCGTTCGCCCACGCCTCCTCCGCCACTTGTGTTGCCCAAGCTGCGACTCAATGCGCTGCTTGCCTCCGATCCAGCACTGAAACCCGATGCCAAGGAGCTCAATCTGCATGAGTCCAGATTGCTGGGTCCACCACCCAAGCCGGAGCAGCAGCAGCAACAAAGTCTTCCAGAGGTGGAGCCACTGTTAAAGCCGGCGCGATTTATGTGCCTGCCCTGCAGCATTGCCTTCAGTTCACCCTCAACGCTGGAGGCGCATCAGGCCTACTATTGCTCGCATCGCAACAAGGATGCCGAGGAGGAGACAAACGCCTCGGGTGATAAGGTATCCACAAACAGTGGAGGCACCTCCAACAGCAATACCAACAGCAGCTCCGGCGGCTCCAGTGGTGGCACAGGTTCCGAACCACCCAACAAGGTGGCACGCATGAACAAACAATATGCTTGCACCCAATGCTCCTACAGCGCCGACAAGAAGGTCTCCCTCAATCGACACATGCGCATGCATCAAACATCGCCAGCGGCACCCAGCTTAAATAGTTTATCCAGCCTGACAGCGAATGGTGTTGTTGCCGCTGCAGCTGCCGCCGCCGCTGCTGCTGCTGCCGCAGGTGCACAGCTCGAGGAGAGCTCTAGTCAACAAATTGATCGCTACTGCAGCGACTGTGATATCCGCTTCAACAACATTAAGACCTATCGAGCCCACAAGCAGCATTATTGCAGCTCCCGACGCAGCGACGGACAACTGACGCCCAAGCAGGAAGCAAGTGGCATTAGTGGAGCAGGAGGCGCTGGAGTTGCTGGTGGAGCTGCAGCAGCAGCAGCAGCAGTTGCTGCTGTTGCCGCCGGCAAGCATAGTCCACAGACGCGCAACAAGACGCCAACGCCAGCAATGGTTGCTGCTGCTGCTGCCGCCGCAGCTGCTGCAGCAGCATCGTTGCAGGTGACTCCGCCGCAACCGTTTCTGGCGCTGCCCACCAATCCAATTATCATTGTGCCCTGCTCGCTAATAAGGGCAGCCAGCTTAATACCAGGGCCACTCACAACCTCCACGTCGGGCATTGTGAATCCGGAATCCACGTGCTTTACACTCGACAATGGCGCCCTTAAGCCTCTCGCCACGGCTCTCAATATAAATGCGTTAGGTGGCAGTGCCACGCCCACAGCCATGCCTAGTAGCAATCACATACAAATTCCCGCTCTAGAGCCAGATCGTCCAGCTGCTGCAAGCAATTTGAACCACCAGGAAGCCGAACCCAAAAGCAGTCCACCAGAACCCAAACGCAAGGAAGCAACTGGAACACGTGAGACGACGCCCTTGGATTTGTCGCTGAGACGCTCACCAATTTCCGCTTTACTGCAACGTCAACGCCTCGTTCGCTCTGCGGCAGCACTGCTTGAGGCCGAGGATGCCGCTGGCAAGGATCACTTGGAGAGCATTAGCGGCGGAAGCGTAACGCCCGAGCAAATTGTTTGCGCCCCCTCGATGCCCAGCAGCCCCTCCATGAGTCCCTCGCCCAAGCGACGTGCTTTGAGTCCACGCAGCTCTGGGGCTGGAAGTGCTTCGTCGATGTCACCGCCAGCCTCTCATCTGCTGGACAGTCTGCCGCCATTGCGTTCGATGCTGCCCTCAGACTTTGCGCTCTCCGAATCGCTGCTGGCCAAGACTAACCCGGAGCTGGCTCTAAAGTTGGCGGCAGCAGCTGCGGCAGCTGTGGCTGGCAGCACTTCAGCGGAACTGGCCAAGCTGGGTTTTCCTGGGGCAGCAGCTGCAAATCCTTCTGGCCCTGCAGCATCTCCTGCTCAGAATGCACCACAGATCTATGTTAAGCAGGGCGTCTCCAAGTGCAAGGAGTGCAATATTGTCTTCTGTAAATATGAAAATTATTTGGCACACAAGCAACATTATTGCTCGGCACGCAACCAGGAAACGGGTCTGGATGGAGATGGCTCCAAGAGTGCGGTGACGCCACCTAGTGGACTCAACTCAGGTGGTGGCAATGCTGGCGCCTCTGCTGCAGAAACCACTCCAGTTGCCTATCAGCAACTCATTTGCGCAGCCTGTGGCATAAAATACACCTCGCTGGATAATTTGCGTGCACATCAGAACTACTACTGTCCGAAAGGTGGCGCTGCTGCTGCGACACCGGCTGAGGCTGCAGCAGCACCACAGCTACCAGTCTCGCAGCCCAAGGAGAAGTGTTTGAAGTGCAAGACACACCATGAGCATGGCCAGAACTGTCCTCCACCGCCGGCCACACCACAACTGCCTGCTCCCTCCTCCTCCTCCTCCATCTCCATCTCTGCGAACTCGAATAGCGTTAACAAGTGTCCCGTTTGTGGTGTTGTCAGTCCCACTGCTGCCCTGGCCCGCAAGCACATGGAGATGCACGGCACTGTGAAGGCTTTTCGCTGCTCCATCTGTCAGTATAAGGGGAATACACTGCGTGGCATGCGCACCCACATTCGCACCCATTTCGATAAGAAGACCAGCGATGTTAATGAGGAGCACTACATGACTTGCATCTTTGAGGAGGATGTGGTAGCTGCAGCAGCTGCCGTTGCTGCCGTTGCTGCACCTCCAACTCAAGCTTTGGGTCTTGATCTCCCTGCTGTGGCAGCCGCGGCGGCAGCAGCAGCAGCAGCGGCTCAAGAGCATATGGAACAGCATCCAGCGCAGCTTTTCAATTGCGATCATTGCAATTATGCTTCCACATACAAAGGCAATGTGCTGCGTCATATGAAACTACTGCATCCACATGTGGCCATTAGTTCGCCATCCATATCGCCCGAGTCGCGTGAACTGGAGGCCAATCCTCATGCACTGCCCGAAGTAGGACTCGTGAATGGGGAACGGGAAGCAGCAGCTGTGGGCAGCTTTCACATCAAGACGGAACCGCTGGAGTCACCTGTAGCCACTTTGGGTCTGGTGCATGAGAACAATAATTCACCCATTGGCACACCACACACGCACATTAAAGCTGAGCCCATGGAACTGGGAGTGGATGTGCCAGTACCAACGCTACCACCTCCAATTACCAACTCTCCACTTGGTCCGAGTGCCGCCGAGGCAATGAAGAAGTACTGCTCCACCTGTGACATATCCTTTAACTATGTGAAAACCTTTTTGGCGCACAAGCAATTCTACTGCAAGAGCAAACTGCATCGGCCAGAGGCAAATGATAGCCCCAGTCCCACGGTGGTTGGAGGCGCCTCAATGCCGCTGCAATCGCCCAACGAGCTGCTGTTGCTGCAGAAGAACAAGGAGAATTTGCAGGAGGCGGCCATTTGA
Protein Sequence: MISSQPATTTTIATATTIKGDCSDTTEEMTVDSRDSKELGAHELSEEKQQQHLEDQPEDEQLEQHSNNSSASQPPIETDMEQELNDAAHEDSSEQKLAENTTTTTTPPRSPTPELVLKLERADTPPSVPATPSPPPRSPTPPPPLVLPKLRLNALLASDPALKPDAKELNLHESRLLGPPPKPEQQQQQSLPEVEPLLKPARFMCLPCSIAFSSPSTLEAHQAYYCSHRNKDAEEETNASGDKVSTNSGGTSNSNTNSSSGGSSGGTGSEPPNKVARMNKQYACTQCSYSADKKVSLNRHMRMHQTSPAAPSLNSLSSLTANGVVAAAAAAAAAAAAAGAQLEESSSQQIDRYCSDCDIRFNNIKTYRAHKQHYCSSRRSDGQLTPKQEASGISGAGGAGVAGGAAAAAAAVAAVAAGKHSPQTRNKTPTPAMVAAAAAAAAAAAASLQVTPPQPFLALPTNPIIIVPCSLIRAASLIPGPLTTSTSGIVNPESTCFTLDNGALKPLATALNINALGGSATPTAMPSSNHIQIPALEPDRPAAASNLNHQEAEPKSSPPEPKRKEATGTRETTPLDLSLRRSPISALLQRQRLVRSAAALLEAEDAAGKDHLESISGGSVTPEQIVCAPSMPSSPSMSPSPKRRALSPRSSGAGSASSMSPPASHLLDSLPPLRSMLPSDFALSESLLAKTNPELALKLAAAAAAAVAGSTSAELAKLGFPGAAAANPSGPAASPAQNAPQIYVKQGVSKCKECNIVFCKYENYLAHKQHYCSARNQETGLDGDGSKSAVTPPSGLNSGGGNAGASAAETTPVAYQQLICAACGIKYTSLDNLRAHQNYYCPKGGAAAATPAEAAAAPQLPVSQPKEKCLKCKTHHEHGQNCPPPPATPQLPAPSSSSSISISANSNSVNKCPVCGVVSPTAALARKHMEMHGTVKAFRCSICQYKGNTLRGMRTHIRTHFDKKTSDVNEEHYMTCIFEEDVVAAAAAVAAVAAPPTQALGLDLPAVAAAAAAAAAAAQEHMEQHPAQLFNCDHCNYASTYKGNVLRHMKLLHPHVAISSPSISPESRELEANPHALPEVGLVNGEREAAAVGSFHIKTEPLESPVATLGLVHENNNSPIGTPHTHIKAEPMELGVDVPVPTLPPPITNSPLGPSAAEAMKKYCSTCDISFNYVKTFLAHKQFYCKSKLHRPEANDSPSPTVVGGASMPLQSPNELLLLQKNKENLQEAAI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00538480;
90% Identity: iTF_01324435;
80% Identity: -