Shsu010287.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Scaptomyza hsui
Gene Symbol
su(Hw)
Assembly
GCA_018152825.1
Location
JAECXO010000004.1:715034-718079[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 12 0.00024 0.02 15.5 2.6 1 20 229 248 229 250 0.94
2 12 2.3e-06 0.00019 21.8 0.4 3 23 301 322 299 322 0.93
3 12 0.008 0.66 10.7 0.1 1 23 328 350 328 350 0.97
4 12 6.4e-07 5.3e-05 23.6 2.5 1 21 357 377 357 378 0.95
5 12 4.8e-06 0.00039 20.8 0.8 2 23 390 411 389 411 0.97
6 12 3.2e-05 0.0026 18.2 2.6 1 23 422 444 422 444 0.98
7 12 6.9e-05 0.0057 17.2 0.9 1 23 450 472 450 472 0.97
8 12 5.4e-05 0.0044 17.5 2.2 1 23 478 500 478 500 0.99
9 12 2.9e-06 0.00024 21.5 2.4 1 23 506 528 506 528 0.98
10 12 5.5e-05 0.0045 17.5 1.1 1 23 532 554 532 554 0.96
11 12 6.8e-05 0.0056 17.2 0.2 1 20 562 581 562 586 0.93
12 12 4.3e-05 0.0035 17.8 0.3 3 23 605 626 603 626 0.96

Sequence Information

Coding Sequence
ATGAGCACCAAAAAGGATGCCCCCGGGGCGACCCCCCTCGGCTCCAGCAGCGGTGGCGGAGGCACAGTGATCAAAGTCATAGAACTTGAAAAACTAGCAACAGCCAAGGACAAACGAACTGGCAAACGCATGAAGTTGCTCAATGATGTAACTGCTCCTAAAGCAAAAACGTCGCCTCGCGTCAAGCAGGAGAAACGCACCAGCATCAAAATACTCAACAACGATGAATCAGTGATCAGTCCGAAAGGCAGCAGCGAAAGGCGGAGCGCCGCTGGAAAAACAACTGTAACTCCTACCGTCAAGATATTAAATGAGAAGCGTATTTCGACCCCCTCCACACCTGTGGAGTCAGCCAAGATTAAGACGTCGCCTGGCAAAAAGAAGAAAATGGACCACTATTGGTTGCAGGCAATCAAGAGCGAGAATAGCAAATCGGAAAGCACGAGCATTCGAGTGGAAATCGATGACGACGACGATACTATTGATTTTATTCTTGCCGATGATGACCCTGAAGTGAGTGCGGCAAAGGAGAATGACGATGAGTTTGTTGTGTCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGTTAGTGCAAAAAATCGTAACGCCGGCAGTAACAACGAACTCAGGGAAATGGTGGAGCACGTGTGTGGCAAGTGCTATAAGACATTCCGGCGCCTCAAGAGCCTAAAGAAACACTTGGAATTCTGTCGCTATGACAGTGGTTATCATCTACGCAAGGCGGACATGCTCAAGAATCTGGAGAAAATCGAAAAGGATGCTGTGGTTATGGAGAAAAAGGACATATGTTTCTGCTGCAGCGAAAGCTACGACACTTTTCATCTGGGGCACATCAATTGTCCCGATTGCCCCAAGTCGTTTAAGACACAGACTAGCTACGAGCGTCACATCTTCATTACTCACTCCGAGTTCAATGATTATCCCTGCTCCATATGCAATGCGAAATTGCGCAGCGCTGCTTTACTAAAACTGCACGAGCAGCAACATCAGTTGCGTGGCAAGCCCTTTGCTTGCAAGATCTGTGGCAAGGACTTTACGCGCTCGTACCACTTGAAGCGCCACCAGAAGTATTCGTCGTGCTCGGCCAACGAAAATGATACCATGACCTGCAAGGTCTGCGATCGCGTCTTCTTTCGCCTGGACAATCTGCGCGCCCATCTCAAGCAGCATTTGGGCACCCACGTGATGAAGAAGCCCGAATACATGTGTGAAGTGTGCAAGAATTGCTTCTACAGCCTGTCAACGCTCAACATACATATACGCACCCACACTGGGGAGAAGCCCTTTGATTGTGATCTGTGCGACAAGAAGTTTTCAGCCTTGGTGGCACTCAAGAAGCATCGTCGTTATCACACCGGCGAGAAACCCTACACCTGTACAGTGTGCAGCCATTCCTTTGCTGTGAAGGAGGTGCTTAATCGTCACATGAAACGGCACACGGGCGAACGCCCGCACAAGTGCGAGGAGTGTGGCAGGAGCTTCATTCAGGCCACACAGCTGCGCACGCATTCCAAGACGCATGTGCGTCCTTTCCCCTGCACCCAATGCCCTGAAAAGTTCAAGACAGAGAAACAACTCGAGCGGCACTCTAAGGAACATTCGCGTAAAAAACGCAGCTCATTTCCCTGTAAGGAATGCTCACGTAGTTTCCGCACCAGTGCGCTGCTTAAGGAGCATGTTGATGCTGGCGATCATTCGCCTAAACCGACACGGGCCAAGCGCACGGCAAAGATGATTGAGCGTACGGATTGTGCAATCTGCGACAAGAACTTTGATAGCACCGAAACGCTTAGGAACCATATACGTTCTGTGCACGAGTGCGATCCGGATGATATTTTTGGCACCGAGCCACCACCTGCAAAACGCAGGGCTAAGAAGACCGTAAAGGTGCTGGAGACAATAGAAGGGGAAGACGAGGACGAGGACGTGGAAGTGGCAGATGAGACAGCTGCCAACACATCGGCGGGCTCATTAATCTCCAGCCAAACGGATGGCAATGGAGTTGTGGTGCGCGAAGTTTCTGCGTTAGGTGAAGGTGACGTCAAGTCGGAGGAAAAGGACAAGGAGAAGCAGTCCCTATCACCAGTTGTCAAGAAGGAGCAGCGCAAATCTCTGGCAGCAAGCTTGGCCGCTGCCATTGCGGATAATCAGGATGATCCGTTGAGCGATGATGACTTCACTGGCGAGGTGCTCACTGAAGAGGACCTCAAGTTGAAGGAGAACATAGCCAAGCTTATTGACATGCTGGTGGATCCAGACACACTTAAGAAATACGGCTGGCCCAACAGCCCCGAGGAGTCGGTCCTTTGCAAGGTCATCGAGAACTGTGGCCACGATCTGAACAAGGGGAGCGAGAACTATTCCGAAATGGATTATGGCAGCCGTATGCGCGAGTATGTCAAACTTCTGTTCACGGTGGTTATTCACAACGATTCCATCAAGTCACTACTGAACAATTTCTGCATTGACGATGTCATTGAGTATGTGCTGGGTGATGAGGATCAGGAGCAAGACCAGGACTTGGAGAAGGAAACGGACAAAGACAAGGAGACAGAGAAATCAGACACGGATGCCGTTGAAGCCGATACTTAA
Protein Sequence
MSTKKDAPGATPLGSSSGGGGTVIKVIELEKLATAKDKRTGKRMKLLNDVTAPKAKTSPRVKQEKRTSIKILNNDESVISPKGSSERRSAAGKTTVTPTVKILNEKRISTPSTPVESAKIKTSPGKKKKMDHYWLQAIKSENSKSESTSIRVEIDDDDDTIDFILADDDPEVSAAKENDDEFVVSXXXXXXXXXXXXXXXXXXXXXXXXVSAKNRNAGSNNELREMVEHVCGKCYKTFRRLKSLKKHLEFCRYDSGYHLRKADMLKNLEKIEKDAVVMEKKDICFCCSESYDTFHLGHINCPDCPKSFKTQTSYERHIFITHSEFNDYPCSICNAKLRSAALLKLHEQQHQLRGKPFACKICGKDFTRSYHLKRHQKYSSCSANENDTMTCKVCDRVFFRLDNLRAHLKQHLGTHVMKKPEYMCEVCKNCFYSLSTLNIHIRTHTGEKPFDCDLCDKKFSALVALKKHRRYHTGEKPYTCTVCSHSFAVKEVLNRHMKRHTGERPHKCEECGRSFIQATQLRTHSKTHVRPFPCTQCPEKFKTEKQLERHSKEHSRKKRSSFPCKECSRSFRTSALLKEHVDAGDHSPKPTRAKRTAKMIERTDCAICDKNFDSTETLRNHIRSVHECDPDDIFGTEPPPAKRRAKKTVKVLETIEGEDEDEDVEVADETAANTSAGSLISSQTDGNGVVVREVSALGEGDVKSEEKDKEKQSLSPVVKKEQRKSLAASLAAAIADNQDDPLSDDDFTGEVLTEEDLKLKENIAKLIDMLVDPDTLKKYGWPNSPEESVLCKVIENCGHDLNKGSENYSEMDYGSRMREYVKLLFTVVIHNDSIKSLLNNFCIDDVIEYVLGDEDQEQDQDLEKETDKDKETEKSDTDAVEADT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01325058;
90% Identity
-
80% Identity
-