Shsu019268.1
Basic Information
- Insect
- Scaptomyza hsui
- Gene Symbol
- Hr39
- Assembly
- GCA_018152825.1
- Location
- JAECXO010000269.1:12627197-12630573[+]
Transcription Factor Domain
- TF Family
- SF-like
- Domain
- zf-C4|SF-like
- PFAM
- AnimalTFDB
- TF Group
- Zinc-Coordinating Group
- Description
- The ligand binding domain of nuclear receptor steroidogenic factor 1 (SF-1): SF-1, a member of the nuclear hormone receptor superfamily, is an essential regulator of endocrine development and function and is considered a master regulator of reproduction. Most nuclear receptors function as homodimer or heterodimers, however SF-1 binds to its target genes as a monomer, recognizing the variations of the DNA sequence motif, T/CCA AGGTCA. SF-1 functions cooperatively with other transcription factors to modulate gene expression. Phospholipids have been determined as potential ligands of SF-1. Like other members of the nuclear receptor (NR) superfamily of ligand-activated transcription factors, SF-1 has a central well conserved DNA binding domain (DBD), a variable N-terminal domain, a flexible hinge and a C-terminal ligand binding domain (LBD). [1, 8, 3, 11, 6, 5, 12, 10, 9, 2, 4, 7]
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 0.13 1.3e+03 -1.4 2.0 122 180 7 65 2 94 0.52 2 4 0.15 1.5e+03 -1.6 4.3 30 147 47 193 37 247 0.46 3 4 2e-06 0.019 14.5 0.1 1 17 349 365 349 368 0.94 4 4 6.2e-86 6.1e-82 276.4 0.3 83 408 454 749 436 749 0.90
Sequence Information
- Coding Sequence
- ATGCCAAATATGTCGAGCATTAAGACGGAGCAGAGTGTTTCACCTGGTGCCAGTTCTGGCAGTTATCAGCTGCCCGTTAACATGTCCACAACAACAACAACAATAGCAACAACAACAACAACATCTCAACAGCAACACCAACAACGTCACAATGTCTCCGTGACGAATATCAAATGTGAACTGGACGATCTGGCAACGCCAACGAATGGCAACCTGGTGCCCGTCATAGCCAACTACAACAATCATAACAATCACAACAACCACAATCATACCATAGCGGGAGGAGGCGGGGGAGGGGGAGGGGGAATGGGGGGAGGCAGTCTGCGCATACCCCTAGGCGTTGTCCACAACGAGGATGAATCCGATTCGGATGCGGAGCTGGCCAACATTGAGAATCTGAAGGTGCGTCGTCGGCGAGGAGCCGACAAGAATGGACCACGACCCATTCCCGACTCCGCCATACATTCCGTCTACACGCACAGCAGCCCCTCCCAGTCGCCGCTCACGTCGCGCCACGCCCCCTACACGCCCTCGCTGAGCAGGAACAACAGCGACGCCTCGCACAGCAGCTGCTACAGCTACAGCTCCGAGTTCAGTCCCACCCACTCACCCATCCAGGCCCGCCATGCCCCGCCCGCTTCGTCTCTCTTTCCCGGCACCGCTGCACCCAATGGTCATCATCATAGTGTGCTCTATCGCCCCCTGAATGTGGATGCAACGGGCGCGCAGGAGGCACAGAACCTGAGCATGGATGCGGGCGGTGGTGGACTGGATGCCAGTGCCACATTGCCAGCCTCACCGGCGGGCATCTCCCGTCAGCAGCTAATCAACTCGCCATGCCCCATATGTGGGGACAAGATCAGTGGCTTCCACTACGGCATCTTCTCGTGCGAGTCGTGCAAGGGCTTCTTCAAGCGCACCGTCCAGAACCGCAAGAACTATGTGTGTGTGCGCGGTGGTCCCTGCCAGGTGAGCATCTCCACGCGCAAGAAGTGTCCCGCCTGCCGCTTCGAGAAGTGCCTGCAGAAGGGCATGAAGCTGGAGGCGATACGCGAGGATCGCACCCGCGGCGGTCGCTCCACCTATCAATGCTCCTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCACACGGAGCAACTGAATCATCATACATCGTCGCGAGCCTCAAGCATTCCAGCCCTGCTGCAGGAAATCATGGATGTTGAACATCTCTGGCAATATACAGATGCAGAACTGGCGCGCATCAATCAACCGCTCTCCTCCTTTGCAACGGGTGGTGGGGGGGGCGGGGGCGGCGGCTCATCAGCATCAGGATCCGGGGGTTCCAGTTCCGCCGGACAGCACACAAGCACTGCCAATGCACAACAACAGATGACCAATCCACTGCTGGCCAGTGCGGGTCTCTCATCCAATGGCGAGAACGCCAATCCCGATCTGATTGCCCATCTCTGCAATGTGGCCGATCATCGACTCTACAAGATTGTCAAGTGGTGCAAAAGTTTGCCGCTCTTCAAAAACATCTCGATTGACGATCAGATTTGCCTGCTCATCAATTCGTGGTGTGAACTGTTGCTCTTCTCCTGCTGTTTTCGTTCCATCGATACGCCCGGCGAGATCAAGATGTCACAGGGTAGAAAGATTACGCTGGCACAGGCCAAGACCAATGGCTTGCAGGCCTGCATTGAGCGCATGTTGAATTTAACGGATCATTTGCGTCGCCTGCGCGTTGATCGCTACGAATATGTTGCCATGAAGGTGATTGTGCTGCTGCAATCAGACACCACGGAGCTGCATGAGGCGGTCAAGGTGCGCGAGTGCCAGGAGAAGGCGCTGCAGGGTTTGCAGGCATATACGCTGGCCCATTATCCCGATACGCCGTCCAAGTTTGGTGAGCTGCTGCTGCGCATACCCGATCTCCAGCGCACGTGTCAGCTGGGCAAGGAAATGCTGACGATTAAAACGCGCGATGGTGCAGATTTCAATTTGCTGATGGAATTATTGCGTGGAGAACATTGA
- Protein Sequence
- MPNMSSIKTEQSVSPGASSGSYQLPVNMSTTTTTIATTTTTSQQQHQQRHNVSVTNIKCELDDLATPTNGNLVPVIANYNNHNNHNNHNHTIAGGGGGGGGGMGGGSLRIPLGVVHNEDESDSDAELANIENLKVRRRRGADKNGPRPIPDSAIHSVYTHSSPSQSPLTSRHAPYTPSLSRNNSDASHSSCYSYSSEFSPTHSPIQARHAPPASSLFPGTAAPNGHHHSVLYRPLNVDATGAQEAQNLSMDAGGGGLDASATLPASPAGISRQQLINSPCPICGDKISGFHYGIFSCESCKGFFKRTVQNRKNYVCVRGGPCQVSISTRKKCPACRFEKCLQKGMKLEAIREDRTRGGRSTYQCSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHTEQLNHHTSSRASSIPALLQEIMDVEHLWQYTDAELARINQPLSSFATGGGGGGGGGSSASGSGGSSSAGQHTSTANAQQQMTNPLLASAGLSSNGENANPDLIAHLCNVADHRLYKIVKWCKSLPLFKNISIDDQICLLINSWCELLLFSCCFRSIDTPGEIKMSQGRKITLAQAKTNGLQACIERMLNLTDHLRRLRVDRYEYVAMKVIVLLQSDTTELHEAVKVRECQEKALQGLQAYTLAHYPDTPSKFGELLLRIPDLQRTCQLGKEMLTIKTRDGADFNLLMELLRGEH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01323439;
- 90% Identity
- iTF_01323439;
- 80% Identity
- iTF_01323439;