Shsu005612.1
Basic Information
- Insect
- Scaptomyza hsui
- Gene Symbol
- bab2
- Assembly
- GCA_018152825.1
- Location
- JAECXO010000165.1:1386846-1411343[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.2e-17 9.2e-14 51.0 0.0 1 43 713 756 713 758 0.95 2 2 0.074 2.1e+02 1.9 0.1 29 42 1035 1049 1035 1051 0.91
Sequence Information
- Coding Sequence
- ATGGATATGACCAAGGACCTAATGGATTTCGATAGGAAACTGGACAGCGAACAATTCGAGCCCAATGATTACACAATGATGAATGTGGAGATGCCAACAACAACAACAACAACAACAAAGCAGAGTCCAGAGCCACAAACAGAAATGGCCTATGAAACGGCTAAAACAGAGGCGGTTAAGGAAGAAGAAACCGCCAACGAACCAACTCCAACGGAGCAAAAGGAACAAAAACACAGCGTTAAGGATGAGGAACATTTGGAGACAAAAGCCGAAGAGGAGGAAAGAGGAAAGAAACCAAATGTTCAGATTGTGTTAAATGAACATCCATTGACGCCTCCGCCACGCCCACTCACCTCCAGTGAGGTTGTGGGTCACACTGAACCCGATGAACCGGAGCTGAGAGTGCAGCTCACGGCTAAAAAGTCACGTTCCCTGCCAGTGTCTCCCCAACCTCTGGTCGCTCACAATTTGACAGCCATTGGACTCTTTGAGTTTGGCCAATCGAGCAAACAAATGTTGGCAGATCATAAGCCAAAGCTGGCCCAGAAGGTGGGAGGACAGCGCAAGCCACAATTCTCCACTGGAGGAACAGGAGGAGGAACAGGAGGAGGAGGAGGTGGGGATAATCAACAGTTTTGCCTGCGCTGGAACAACTATCAATCGAATCTGACGAATGTCTTCGATGAGCTGCTGCAGAGCGAATCCTTTGTGGATGTGACCCTAGCCTGCGAGGGACACTCGATCAAGGCCCACAAGATGGTCCTCTCGGCCTGCTCACCCTACTTCCAGGCGCTCTTCTACGACAATCCCTGCCAGCATCCCATCATCATCATGCGGGATGTGAACTTTGGCGATCTCAAGGCCTTGGTGGAGTTCATGTACAAGGGCGAGATCAATGTGTGCCAGGATCAGATCAATCCACTGCTCAAGGTCGCCGAGACCCTCAAGATTCGAGGCTTGGCCGAGGTCAGTGCCGGATCCGGGTCCAACTCGGGCGGGATTGGAGGCACCTCCCTGCTCCCCGAGCAACGGATGACCGTCTACGACGAGGACGATGAGGAGGAGCTGGCCATTCTGCGGGACAACGACGAGGATGAGCAATCGGCGCTGCTCAAACCCAAGCGGGCACGTCTCCTGGAGAAGCTTCAGGCCGAATCCGCTCTGGATCTGAATCAGCGACAGAGGAAACGTTCTCGCGATGGCAGCTATGCCACGCCCAGTCCTCTGCCCCTGCCCCTGCCCCTCTCCCTGCCGCTGCGTGCGGACTCACCGCAAAGGGGCGTGGCCACGCCCAACTCCTCCAGCTCCAGCTCGGGCCAACAGCCGCTGGCCATGACCACCTCCACCATAGTGCGCAATCCCTTCGCCTCACCCAATCCCCAAGCCCTGCAGTCCGGCTCCTCCGCCTCCGCCTCCAGCAGCAGCAGCTCAGCCGGCACCAGCAGCTGCTCCTCCAGCTCTGCCTCCTCCTCCTCCGCCCCCCCGGCTGCCTCAAATCCCTACCGTTCCAATGCACGCAGCTGCTCTCCTCCACCACCACCGCCACCACCAAGCCATCAACAACAACAACAACAACAGCAGTCCCACAACGGATCCTCCACCACATCCCTCAGCTCACCCACTCCGGGCAAGAGCTCCGGATCCTCCCAATCTCTCCACATGGCCGCCGCCGTCGCCGCCGCCGCCCACCACTCCAACTCCGGATCGGTGGTGCCACCACCCAGCCACCACCATGCCGCAGCTGCCGCAGCCCAACAGCTGGCCGCCCAGCACCAACTGGCCCACTCCCATGCAGCCATGGCCAGCGCTCTGGGCGCCTCCCTGGCCGCCGCAGCCGCCGGAGGAGCTTCGGCGCCGGGCAACGGTGGCAACTCTGGCTCATCCTCGGTGGGCGGACATCACGATGACATGGAGATCAAGCCGGAAATCGCCGAGATGATACGCGAAGAGGAGAGGGCCAAAATGATTGAGACGAGCGGACATGGCTGGATGGGCGCACCGGCAACAGGCGCATCTGTGGCGGCAGACAGCTACCAGTATCAGTTGCAGTCCATGTGGCAGAAGTGCTGGAACACCAACCAACAGAATCTGGTGCAACAGCTGCGCTTTCGCGAGCGAGGACCTCTCAAATCCTGGCGACCCGAAGCCATGGCCGAGGCCATCTTCAGTGTACTAAAAGAGGGACTCTCTTTATCGCAAGCTGCACGCAAATTCGATATACCCTATCCCACATTTGTGCTCTATGCGAATCGTGTGCACAACATGCTCGGACCCTCGCTAGATGGCGGCACTGATCCGCGACCCAAGGCTCGAGGACGTCCCCAACGCATTCTCTTAGGCATGTGGCCCGAGGAGCTCATCCGCAGCGTCATCAAGGCCGTCGTCTTCCGTGACTATCGCGAGATCAAGGAGGACATGGGCGCTCACCAGTACGCCAACGGACAGGCACATGGCGCTCACTTTGGCTCTGGTAATTCGTCGGCTGCGGCCAATGGCTATCATAGTGCTGCGGTCAAGATGGCCGCACAGAATGCTGCTCTCGCTCCGCCCGATGGCAGTAATCCTCTCAGCACCATGACGGAGACCCTTCGTCGCCAGATACTCTCCCAGCAGCAGCAGCAACAGCAGCAGCAACAACAACAATCGATGAACATGTACAAGTCTCCGGCTTACTTGCAACGCTCCGAGATCGAGGATCAGGTGTCCGCGGCAGCGGCAGCGGCAGCCAAGCATCAACAGAACGAGCGACGAGGCAGCGAGAATCTGCCGGATCTGAGTGCACTTGGGCTGATGGGTTTGCCCGGATTGAATGTGATGCCAGCGCAGCAGCAGGCGCAGCATCAGCGTGGAGGAGGAGGGGGCGGAGCGGCAGGTAATGGAGGCAGTGGCAGTGGAGGCGCTGCGGCCATGCATCCCAGTGCCGCCAGCTATGCGAGAGAGCTGTCGCGTGAGCGGGAGCGGGAGCGCGAGATGTCCCGGGATCGGGAGCTGAAGGAGGCGATGCATGCCCGCCAGTATGGCAATCAGTCACGTGGCTCCAACTCCTCCTCCGCCGGCAGCAAATCGGCGGCAGGATCATCGAGTCGTCCCGGTGCCGCCTCGCCCTACTCCTCCCTCTACTCGAAGCACGCCAAGGAGCATCCCAACTATGCGTACAACAAACGCTTCCTGGAGAGTCTTCCGGCGGGCATTGACTTCGAGGCCATTGCCAATGGATTGCTGCACAAGTCCGTGAACAAGAGTCCGCGCTTCGAGGACTTCTTCCCCGGCCAGGACATGAGCGAACTCTTTGCCAGCGCCAGCGATGCAACCGGAGCAGGTGCCTCAGCAGCAGCGGCGGCGGCGGCGGCAGCGGCAGCAGCCTATGCGCCGGGTCCGTTGAGGGAGTCGCCGCTGATGAAGATCAAGCTGGAGCAGCAGCAGGCGACAGAGTTGCCGCACGAGGATTGA
- Protein Sequence
- MDMTKDLMDFDRKLDSEQFEPNDYTMMNVEMPTTTTTTTKQSPEPQTEMAYETAKTEAVKEEETANEPTPTEQKEQKHSVKDEEHLETKAEEEERGKKPNVQIVLNEHPLTPPPRPLTSSEVVGHTEPDEPELRVQLTAKKSRSLPVSPQPLVAHNLTAIGLFEFGQSSKQMLADHKPKLAQKVGGQRKPQFSTGGTGGGTGGGGGGDNQQFCLRWNNYQSNLTNVFDELLQSESFVDVTLACEGHSIKAHKMVLSACSPYFQALFYDNPCQHPIIIMRDVNFGDLKALVEFMYKGEINVCQDQINPLLKVAETLKIRGLAEVSAGSGSNSGGIGGTSLLPEQRMTVYDEDDEEELAILRDNDEDEQSALLKPKRARLLEKLQAESALDLNQRQRKRSRDGSYATPSPLPLPLPLSLPLRADSPQRGVATPNSSSSSSGQQPLAMTTSTIVRNPFASPNPQALQSGSSASASSSSSSAGTSSCSSSSASSSSAPPAASNPYRSNARSCSPPPPPPPPSHQQQQQQQQSHNGSSTTSLSSPTPGKSSGSSQSLHMAAAVAAAAHHSNSGSVVPPPSHHHAAAAAAQQLAAQHQLAHSHAAMASALGASLAAAAAGGASAPGNGGNSGSSSVGGHHDDMEIKPEIAEMIREEERAKMIETSGHGWMGAPATGASVAADSYQYQLQSMWQKCWNTNQQNLVQQLRFRERGPLKSWRPEAMAEAIFSVLKEGLSLSQAARKFDIPYPTFVLYANRVHNMLGPSLDGGTDPRPKARGRPQRILLGMWPEELIRSVIKAVVFRDYREIKEDMGAHQYANGQAHGAHFGSGNSSAAANGYHSAAVKMAAQNAALAPPDGSNPLSTMTETLRRQILSQQQQQQQQQQQQSMNMYKSPAYLQRSEIEDQVSAAAAAAAKHQQNERRGSENLPDLSALGLMGLPGLNVMPAQQQAQHQRGGGGGGAAGNGGSGSGGAAAMHPSAASYARELSREREREREMSRDRELKEAMHARQYGNQSRGSNSSSAGSKSAAGSSSRPGAASPYSSLYSKHAKEHPNYAYNKRFLESLPAGIDFEAIANGLLHKSVNKSPRFEDFFPGQDMSELFASASDATGAGASAAAAAAAAAAAAYAPGPLRESPLMKIKLEQQQATELPHED
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01321846;
- 90% Identity
- iTF_01323457;
- 80% Identity
- iTF_01323457;