Sfla009055.1
Basic Information
- Insect
- Scaptomyza flava
- Gene Symbol
- bab2
- Assembly
- GCA_003952975.1
- Location
- RKRM01000164.1:68072-98608[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 3.2 7.4e+03 -3.4 0.1 3 12 558 567 557 575 0.75 2 3 1.2e-17 2.8e-14 52.4 0.0 1 43 725 768 725 770 0.95 3 3 0.54 1.3e+03 -0.9 0.0 29 42 1048 1062 1048 1064 0.91
Sequence Information
- Coding Sequence
- ATGGATATGACCAAGGATATAATGGACTTTGATGGCAAATTGGACAGCGCGCAATTCGAGCCCAACGATTTTTCAATGATGAATGTAGAGATGCCAATCAAACAGCAACCCGATCCCGAAACACAAACAGATATGGCGGCAGCCTATGAAACGGCCAAGATAGAGGCGATTACAAATGAAGCAACTAACGAAGAACCGCTTCCAATTGAGCAACAGGAAGCGGAACACAAACAATCGGAACAAAAACATTCGATTAAACTGGAGAAGGAACTTTTAGAGCAAGTtgagaaaataaagaaaccaAATGTTCGAGTTGTATTAAATGAACATCCATTGACGCCGCCACCACGCCCACTAACCTCCAGTGAGGTTGTTGGTCACACTGAACCGGAAGAACCGGAACTGCGAGTACAGCTAACAGCCAAAAAGTCACGTTCCCTGCCCGTTTCGCCACAACCTTTGGTTGCACACAATTTGACAGCAATTGGACTCTTTGAGTTTGGTCAATCAGCAAGCAAAACGGAACACAAACCAAAGCTAGCACAGAAGATGGGGTTAGCAGGAGCAGGAACAGGAGGAGGAGGACTGTCTGCTGGACAGCGTAAGACACAGTTCTCGCATGGACCCGGAACAGGCGGACCAACAGCTGGCGATAATCAACAGTTTTGCCTGCGTTGGAATAACTATCAATCGAATCTGACGAATGTCTTCGATGAACTGCTGCAGAGCGAATCGTTTGTCGATGTGACTTTGGCCTGCGAGGGACACTCGataaaagcacacaaaatggTTCTGTCCGCCTGCTCGCCCTACTTTCAAGCCCTCTTCTACGACAATCCCTGCCAGCATCCCATAATCATAATGCGCGATGTCAACTATGGCGATCTGAAGGCCTTGGTCGAGTTTATGTATAAGGGCGAGATAAATGTGTGCCAGGATCAAATCAATCCGCTGCTCAAAGTGGCTGAAACATTGAAGATACGCGGCTTGGCCGAGGTGAGTGCAGGTTCGAGTACCAGCTCTGGTGGCGGCATTGGTGGCGCCTCCTTGCTGCCGGAGCAACGCATGACCGTCtacgatgatgacgatgacgaggAGTTGGCCATTTTGCGCGACAATGACGAGGACGAGCAATCGGCGCTGTTGAAACCCAAGCGGGCTCGTCTCTTGGAGAAGCTACAAGCTGAATCCGCTCTAGATTTGAATCAGCGCCAGCGCAAACGTTCTCGTGACGGCAGCTATGCCACGTCCAGTCCTCTGCCACTGTCCCTGCCGCTGCGTTCGGAGTCGCCACAGCGAGGCGTTGCAACGCCCAACTCCTCCAGCAGCGGAGGCCAACAGCCGCTGGCAATGACCACCTCAACCATTGTGCGTAATCCCTTCGCCTCACCCAATCCACAAACACTACAGTCCACCGGCTCCTCGGCATCTAGCAGCAGTTCAGGTGGCTCCACAgccggcaacagcagctgctccTCCAGCTCTGTCTCCTCCGCAGCAGCTCCACCTGCTGCCTATCGTTCCAATGCACGCAGCTGCTCTCCGCCGCCACCACCGCTGccgccaacagcagcaagccATCAACAGCACTCCCACAATGGATCATCGAATGGCGCCTCCCTCAGCTCACCCACTGGCAAGAGTTCGGGATCGTCTCAATCTCAGCTGCCTGCACATATGGCGGCTGCCGTTGCCGCCGCTGCTCATCACTCGGGCTCTGGCTCAGTGGCGGGGCCACCATCCAGTCAAAGTGCCGCATCGCTGCATCATCATGCGGCAGCTGCCGCAGCTCAACAGCTGGCCGCCCAACATCAATTGGCGCACTCGCATGCCGCAATGGCGAGCGCCTTGGGCGCCTCGctagcagctgcagcagccggTGGCGCTTCGGCGCCAGGCAACGGTGGTGCTGGTTCATCATCGTCGGTGGGTGGACATCACGATGACATGGAAATCAAACCGGAAATTGCCGAAATGATACGCGAAGAGGAGAGGGCCAAAATGATTGAGACAAGCGGACATGCCTGGATGGGTGCACCGGCAACAGGCGCATCTGTGGCGGACAGCTACCAGTATCAGTTGCAGTCCATGTGGCAAAAATGCTGGAACACTAACCAACAGAATTTGGTGCAACAGCTGCGCTTTCGCGAACGCGGACCACTCAAATCGTGGCGACCCGAAGCCATGGCCGAGGCCATATTCAGCGTACTAAAGGAAGGACTCTCGCTGTCGCAAGCGGCACGCAAATACGATATACCCTATCCCACATTTGTACTCTATGCGAATCGTGTTCACAATATGCTCGGACCTTCGCTCGACGGTGGCACCGATCCCCGGCCCAAGGCACGTGGACGTCCCCAACGCATTCTGCTCGGCATGTGGCCCGAAGAGCTCATACGCAGCGTCATCAAGGCGGTCGTGTTCCGTGACTATCGTGAGATCAAGGAGGATATGGGCGCACATCAGTACGCAAATGGACAGGCACATGGCTCACACTTTGGTTCGGGCAACTCGTCGGCTGCTGCCAATGGCTATCATAGTGCAGCGGTTAAGATGGCCGCACAGAATGCTGCACTTGCACCACCCGATGGCAGCAATCCGCTTAGCACTATGACGGAGACACTTCGACGCCAGATACTCtcccagcagcaacagcaacaacaacaacagcagcaacaacaacaatcgccgCACGTTCAATCGATGAATATGTACAAGTCGCCGGCATACTTGCAACGCTCCGAGATTGAGGATCAGGTGTCCGCAGCGGCGGCAGCCAAGCATCAGCAGAACGAGCGACGAGGCAGTGAGAATCTGCCAGATCTAAGTGCGCTTGGATTGATGGGCTTGCCGGGTCTGAATGTGATGCCATCGCAGCAGGCGCCGCATCAGCGTggaggcggcggcggcggtggagCGGCAGGCAATGGTGGCAGTGCTGGCGCTGCCATGCATCCCAGTGCCGCCAGCTATGCGAGAGAACTATCCCGTGAGCGTGAACGAGAGCGTGAAATGTCACGGGATCGGGAGCTCAAGGAGGCGATGCATGCGCGTCAATATGGCAATCAGTCGCGTGGTTCGAACTCCTCGGCGGGCAGCAAATCGGCCGCCGGCTCATCGAGTCGTCCCGGTGCCGCATCGCCCTACTCCGCACTGTATTCGAAACACGCCAAGGAACATCCCAACTACGCGTATAACAAACGCTTTCTGGAGAGTCTGCCCGCCGGCATTGATTTCGAGGCGCTTGCCAATGGCTTGCTGCACAAGTCGGTGAATAAGAGTCCGCGTTTCGAGGACTTCTTTCCGGGCCAGGATATGAGCGAGCTGTTTGCCAGCGCCAGTGATGCAGCCGGAGTTGGTGGCGGCGCCGGTGcatcagcggcagcagcagcggcggcagcagcagctgcctaTGCGCCCGGCGCCATGCGCGAATCCCCGCTAATGAAGATCAAGCTGGAGCAACAGCAGGCGACAGAGTTGCCACACGAGGATTGA
- Protein Sequence
- MDMTKDIMDFDGKLDSAQFEPNDFSMMNVEMPIKQQPDPETQTDMAAAYETAKIEAITNEATNEEPLPIEQQEAEHKQSEQKHSIKLEKELLEQVEKIKKPNVRVVLNEHPLTPPPRPLTSSEVVGHTEPEEPELRVQLTAKKSRSLPVSPQPLVAHNLTAIGLFEFGQSASKTEHKPKLAQKMGLAGAGTGGGGLSAGQRKTQFSHGPGTGGPTAGDNQQFCLRWNNYQSNLTNVFDELLQSESFVDVTLACEGHSIKAHKMVLSACSPYFQALFYDNPCQHPIIIMRDVNYGDLKALVEFMYKGEINVCQDQINPLLKVAETLKIRGLAEVSAGSSTSSGGGIGGASLLPEQRMTVYDDDDDEELAILRDNDEDEQSALLKPKRARLLEKLQAESALDLNQRQRKRSRDGSYATSSPLPLSLPLRSESPQRGVATPNSSSSGGQQPLAMTTSTIVRNPFASPNPQTLQSTGSSASSSSSGGSTAGNSSCSSSSVSSAAAPPAAYRSNARSCSPPPPPLPPTAASHQQHSHNGSSNGASLSSPTGKSSGSSQSQLPAHMAAAVAAAAHHSGSGSVAGPPSSQSAASLHHHAAAAAAQQLAAQHQLAHSHAAMASALGASLAAAAAGGASAPGNGGAGSSSSVGGHHDDMEIKPEIAEMIREEERAKMIETSGHAWMGAPATGASVADSYQYQLQSMWQKCWNTNQQNLVQQLRFRERGPLKSWRPEAMAEAIFSVLKEGLSLSQAARKYDIPYPTFVLYANRVHNMLGPSLDGGTDPRPKARGRPQRILLGMWPEELIRSVIKAVVFRDYREIKEDMGAHQYANGQAHGSHFGSGNSSAAANGYHSAAVKMAAQNAALAPPDGSNPLSTMTETLRRQILSQQQQQQQQQQQQQQSPHVQSMNMYKSPAYLQRSEIEDQVSAAAAAKHQQNERRGSENLPDLSALGLMGLPGLNVMPSQQAPHQRGGGGGGGAAGNGGSAGAAMHPSAASYARELSREREREREMSRDRELKEAMHARQYGNQSRGSNSSAGSKSAAGSSSRPGAASPYSALYSKHAKEHPNYAYNKRFLESLPAGIDFEALANGLLHKSVNKSPRFEDFFPGQDMSELFASASDAAGVGGGAGASAAAAAAAAAAAYAPGAMRESPLMKIKLEQQQATELPHED
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01321997; iTF_01323302; iTF_01323457; iTF_00514100; iTF_00514241;
- 90% Identity
- iTF_01321997;
- 80% Identity
- iTF_01321997;