Sgra002695.1
Basic Information
- Insect
- Scaptomyza graminum
- Gene Symbol
- -
- Assembly
- GCA_018901835.1
- Location
- JAEIFL010000132.1:18284310-18285048[+]
Transcription Factor Domain
- TF Family
- zf-LITAF-like
- Domain
- zf-LITAF-like domain
- PFAM
- PF10601
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family display a conserved zinc ribbon structure [3] with the motif C-XX-C- separated from the more C-terminal HX-C(P)X-C-X4-G-R motif by a variable region of usually 25-30 (hydrophobic) residues. Although it belongs to one of the zinc finger's fold groups (zinc ribbon), this particular domain was first identified in LPS-induced tumour necrosis alpha factor (LITAF) which is produced in mammalian cells after being challenged with lipopolysaccharide (LPS)[2]. The hydrophobic region probably inserts into the membrane rather than traversing it. Such an insertion brings together the N- and C-terminal C-XX-C motifs to form a compact Zn2+-binding structure [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.6 3e+03 -1.8 0.4 4 63 9 17 6 24 0.57 2 2 2.7e-13 3.2e-10 39.8 13.0 6 70 144 208 140 208 0.97
Sequence Information
- Coding Sequence
- ATGGCGTCACAACCACCCGAAGAACAGTATGTTCGGTGCCTCAAATGTTTAAAGATACTTTCTTGTTCGCGCTATAACACCAATGGCCTGGTAAATCACATTCGAAACGATCATCCGGAGATCCTGGGAGGCATTGACAGCGAGAAGGTGTCCAGGCTGCACAAGCTGGCTGCAGCCCATGGCATCAGCGAGGATCGTATCTCGGAGATTGCCAAAATGACAGGCTTGTCCGAGGATGAAATGGCCGACAAGGCAGAACGCTATATACAGCAAAAGCAGCGCACTAGCAGTGTAAAGTGCGAAAGCGAAGATAAGTCAAGAATTAAACCAAAGGAACTGAAAACACCAAAGGCAATTGACTCAAAGGAAAAAAATTATCGACAATATTATCGTAGCTCCATCGAGCGTTGGATACCAATAGAAGGTTGCATATACTGCCCTAATTGCGGTTGCAAGCAACGTCCGATGATCAAAACTAGTGCCGAATTTTATGCAAACACCGATTGCTCAACTTGCTGTGTGCTCGGTGTTTGGCCCTTATGCTTTCTGCCCTGTTTGACTCCGAGCGACAATGGTGAATATCTCCACTGTTCCAATTGTGACACTTTCTTGGCCATTTATGATCGCGAGAGGAATTGTATACGTCCCAACGGTGAATTTTTATAG
- Protein Sequence
- MASQPPEEQYVRCLKCLKILSCSRYNTNGLVNHIRNDHPEILGGIDSEKVSRLHKLAAAHGISEDRISEIAKMTGLSEDEMADKAERYIQQKQRTSSVKCESEDKSRIKPKELKTPKAIDSKEKNYRQYYRSSIERWIPIEGCIYCPNCGCKQRPMIKTSAEFYANTDCSTCCVLGVWPLCFLPCLTPSDNGEYLHCSNCDTFLAIYDRERNCIRPNGEFL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01322791;
- 90% Identity
- iTF_01322791;
- 80% Identity
- iTF_01322791;