Sgra002930.1
Basic Information
- Insect
- Scaptomyza graminum
- Gene Symbol
- -
- Assembly
- GCA_018901835.1
- Location
- JAEIFL010000303.1:570053-573231[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 4.6e-06 0.0003 20.9 5.5 1 23 168 191 168 191 0.97 2 16 0.0024 0.16 12.3 4.1 1 23 242 265 242 265 0.96 3 16 0.00075 0.049 13.9 2.8 1 23 330 353 330 353 0.94 4 16 0.0056 0.36 11.1 0.6 2 23 405 426 404 426 0.96 5 16 2.5 1.6e+02 2.8 1.4 1 21 539 559 539 560 0.87 6 16 0.023 1.5 9.2 0.6 1 23 569 591 569 591 0.93 7 16 0.00041 0.027 14.7 3.0 1 23 598 620 598 621 0.96 8 16 0.00024 0.015 15.5 1.6 2 23 629 650 628 650 0.96 9 16 0.015 0.95 9.8 0.1 3 21 678 696 676 700 0.88 10 16 0.26 17 5.9 0.8 1 23 738 761 738 761 0.94 11 16 9.8 6.3e+02 1.0 2.6 1 22 768 789 768 789 0.93 12 16 0.0025 0.16 12.2 0.6 1 23 798 821 798 821 0.97 13 16 1.4e-05 0.00094 19.3 0.5 1 23 840 863 840 863 0.97 14 16 0.087 5.7 7.4 0.2 1 23 873 895 873 895 0.94 15 16 2.2e-05 0.0014 18.7 3.3 1 23 901 923 901 923 0.99 16 16 4.6e-05 0.003 17.7 0.9 1 23 929 951 929 951 0.98
Sequence Information
- Coding Sequence
- ATGGCTAGAACGTGTAGAGTCTGCGGTGGTGCAGATGGACGCCTTTGGATCGATACGCCTGCTCATAAATATGCACCAAAAACATTTAATCAATTGGTACTGGAGCTAACTAAACTCGAGGTTTCTTTAGATAAAGTTGGCAAGCTGCCGCCCTGGATTTGTCGCAACTGTGTACATAAATTGGAAAATGCCTACGACTTTGTGGTGCAAGCGCGCGAAACCTACAAGCTCTTGCTGCAGAAACTGGCCGTAAAACCTTTATTTGAGGACACCGAAACGGAGTGTTTGCGAGAGACGCCCATACAATTGCTGGAAATAGAGGGCGTCATAATTAAAATGGAAGAACCAACAGAAACATCAGTACCACAATCCGACTCAACCGGCTCAATAGATCCTCTGATTAAAAAAGGCCGTACGGACGATGGCAGCGATAATGATTCTGAAGACGATGATGTGCCGCTTCAGCAGCGCCAAATCGCACACACAAAACTGCATACAATGCACCAGTGCAATAAGTGCGACAAGTCCTTTAGATATATTTCCAATCTCTTCAGGCACAAGCGCCGAGATCACACCCCAGAGCATAGCCAAGGCAAAGAGCAGGACGGCGGAAAGAATAAAAAGACTGGTGGCGTGAAACCGTTTTTTCACAATTTAATCAGGAGCTCCATGGCAGCACAAAGCAGCGCGGCAGAAAATGAAAGTGAATCAGAGGATGGATACTACAAATGCGATCAATGCGACAAATCCTACAAGTACATAATGCTGCTAATCAAACATAAGCACAAGACGCACGTTTCCAACCAGTGGTTAACAGAATCAAGACGAATTAGAAGCAGCGGATCAAGTCGAGAACAGAGATTTAAACAAGGATTGCCGCGACAGCATTTAAAACCATCCAGCACCGATTCTCTGGTACACAGCATTATAAAAGAAATCAACTTGCCCGATGAGATCGATGCAGATACCTCGAGCACAGATAACTACTACAAGTGCGACCAGTGCGACAAGTCTTACAAATACATTGTGAGCCTCATCAAGCACAAGCATAACGAGCACAAGGATAATAATGATTCTGACGAGGAAGAGAACGAGGCAATGCCTTCCAGATATACGGCAGATGCATCTACCATGTCTAAGCCCTCGCGCATTGATCGTCGCGTGAAGGGATTCGATTTGCATCGCTGTAGGCCGAACGGATCCAAGGAAATTCAATGCATGATCTGTCTGCGCAGATTCATCAAATTACGTCAGCTGCGCGAGCATTTGAAAGCACATCCCAGAGACTTTACATTTGAGGCTCACGGCGAGCCAATTGAACGCATTGCCGAAGGATTCTATAAGACAGCCGTGGAGTCCACGCTTGTAGGCCTAAAGCGACGCATCTTCAAAGATCTCAAAGCTGGCATGCTTGGGCGCTACTACTCCATAACAAATGAGGCGCGCTACGAGATGAATTTGGACAGCTCGGACACAGACAGCGACGGCGAAGCCGATGTTGTCGTGCGGAACTCATATGCCTGCGAACTGTGTGACTCTCCGGATGCCGTGTGGCCACGCAAGTATCAATTGCACGAGCATCATCGGCAGCAGCACACCTGGTTGGAGGCGCCGCACGTCTGTCAGCGCTGTGATTCACGTTTCCTCAGCGCTCAGTTGCTCGAACATCATACACAAAAACTCTGTCAGAACACTTTAAAGCGCTTCATGTGCGACAAATGTCCGCAACGATTCTTTTGGCGCCGCAATCTACGTGCGCATCTCGTGGATCACAAAAACAAGCAAGAGATATACTCATGTGATCAGTGTTCGCGCAGTTTTCAGGACAAGAGCGCTGTAACTAAGCACAAGCTAATGCATCATGATGTTGGCAACAAGCTCTTGCCTTGCCGTTGGTGCACCCGCACTTTTTACCGTCCGGCGCTGCTGCACAAGCATTTGCAGCGTCATGGCTTTAGTGGTGGGGACCTACCACTGGCCGAGACACTGCTCGCCGATGCTGCCAAGCCATCGGGAACTAAAACGATTATCTGTAAGCTATGCGACATGCAGTTCGTTAGCATTGGCGATTTGAGGCGACACAACTCAATGCAGGCGCACAGTGCTGAGGTATCAAACTATATGATAAGCACCGAGGAGGGCTTTGAGCTGCAGCTGGATGAAACGGATGATAGTGATGAGGAGCCCACGAGTACAGTAGCTAATCGAACTTATAATTGCGATTTGTGTGAGATGAGCTTTCTGCGCAGGCGTGACATGAGCGAACATCAGTACTCGTTGCACACCTTTGACAAGCTGCCACATTCCTGCAATCATTGCATTTTTAAAACAGTTGATAAGAGCATCTTGGAGCACCATCTACGCACACAATGTCTTAACGAGGAGAAAAAATTCAAGTGCTCGCGTTGTGGCTACAAATTTATGTGGCCTGTAAATCTAAGTCAACACATGAGCAGTCTACATCCGAAATCATCTAGTCAGATGGCCGTTGCCACAAAGCGCAGCAGACGTTTTCGTTATCAGTGTCCGCACTGTTGGCGCTCGTTTGTGGTACAGCCCAGCTTAGATAAGCACATACGTGACATGCATGTCGCTAAAAAGAATCCCGGCAAGAAGTATCTTTGCTCGCTGTGCGGCTTGGAGTCGTTGACGCCCAACAAGCTCAGCATACACATGCGTCGTCACAACGGCGAGAAGCCATTCAAATGTGATCTCTGCGATATGTCCTTTACTGTGCACTACGAGCTGAAGGTGCACCGTCGCAAGCACACGGGCGAGCGACCCTATCAGTGTACGTTTTGTGCCAAGGATTTCGCTCGGCCGGATAAGCTAAGACGGCATGTGTACATGCATAGCGTTAAGCGATAA
- Protein Sequence
- MARTCRVCGGADGRLWIDTPAHKYAPKTFNQLVLELTKLEVSLDKVGKLPPWICRNCVHKLENAYDFVVQARETYKLLLQKLAVKPLFEDTETECLRETPIQLLEIEGVIIKMEEPTETSVPQSDSTGSIDPLIKKGRTDDGSDNDSEDDDVPLQQRQIAHTKLHTMHQCNKCDKSFRYISNLFRHKRRDHTPEHSQGKEQDGGKNKKTGGVKPFFHNLIRSSMAAQSSAAENESESEDGYYKCDQCDKSYKYIMLLIKHKHKTHVSNQWLTESRRIRSSGSSREQRFKQGLPRQHLKPSSTDSLVHSIIKEINLPDEIDADTSSTDNYYKCDQCDKSYKYIVSLIKHKHNEHKDNNDSDEEENEAMPSRYTADASTMSKPSRIDRRVKGFDLHRCRPNGSKEIQCMICLRRFIKLRQLREHLKAHPRDFTFEAHGEPIERIAEGFYKTAVESTLVGLKRRIFKDLKAGMLGRYYSITNEARYEMNLDSSDTDSDGEADVVVRNSYACELCDSPDAVWPRKYQLHEHHRQQHTWLEAPHVCQRCDSRFLSAQLLEHHTQKLCQNTLKRFMCDKCPQRFFWRRNLRAHLVDHKNKQEIYSCDQCSRSFQDKSAVTKHKLMHHDVGNKLLPCRWCTRTFYRPALLHKHLQRHGFSGGDLPLAETLLADAAKPSGTKTIICKLCDMQFVSIGDLRRHNSMQAHSAEVSNYMISTEEGFELQLDETDDSDEEPTSTVANRTYNCDLCEMSFLRRRDMSEHQYSLHTFDKLPHSCNHCIFKTVDKSILEHHLRTQCLNEEKKFKCSRCGYKFMWPVNLSQHMSSLHPKSSSQMAVATKRSRRFRYQCPHCWRSFVVQPSLDKHIRDMHVAKKNPGKKYLCSLCGLESLTPNKLSIHMRRHNGEKPFKCDLCDMSFTVHYELKVHRRKHTGERPYQCTFCAKDFARPDKLRRHVYMHSVKR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00567692;
- 90% Identity
- -
- 80% Identity
- -