Basic Information

Insect: Scaptomyza flava
Gene Symbol: -
Assembly: GCA_003952975.1
Location: RKRM01000104.1:164301-179004[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 2e-05 0.0015 18.7 2.1 1 23 258 280 258 280 0.97

2 18 6.6e-06 0.0005 20.2 0.4 1 23 286 308 286 308 0.97

3 18 0.00097 0.074 13.4 0.9 1 23 314 336 314 336 0.95

4 18 1.4e-05 0.0011 19.2 3.1 1 23 342 364 342 364 0.97

5 18 3.2e-05 0.0024 18.1 4.7 1 23 370 392 370 392 0.99

6 18 5.8e-05 0.0044 17.3 5.7 1 23 398 420 398 420 0.97

7 18 2.8e-07 2.2e-05 24.5 4.3 1 23 426 448 426 448 0.98

8 18 1e-07 7.7e-06 25.9 2.4 1 23 454 476 454 476 0.97

9 18 5.9e-05 0.0045 17.2 6.7 1 23 483 505 483 505 0.97

10 18 0.0001 0.0078 16.5 6.5 1 23 511 533 511 533 0.98

11 18 9.2e-06 0.0007 19.8 4.5 1 23 539 561 539 561 0.98

12 18 6.7e-06 0.00051 20.2 8.1 1 23 567 589 567 589 0.98

13 18 5.4e-06 0.00041 20.5 7.6 1 23 595 617 595 617 0.97

14 18 6.1e-07 4.6e-05 23.5 7.7 1 23 623 645 623 645 0.98

15 18 0.00019 0.014 15.7 9.5 1 23 651 674 651 674 0.95

16 18 6.7e-05 0.0051 17.1 0.9 1 23 680 702 680 702 0.98

17 18 0.0011 0.087 13.2 4.4 1 23 712 734 712 734 0.98

18 18 8.4e-06 0.00064 19.9 1.6 1 23 740 763 740 763 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	2e-05	0.0015	18.7	2.1	1	23	258	280	258	280	0.97
2	18	6.6e-06	0.0005	20.2	0.4	1	23	286	308	286	308	0.97
3	18	0.00097	0.074	13.4	0.9	1	23	314	336	314	336	0.95
4	18	1.4e-05	0.0011	19.2	3.1	1	23	342	364	342	364	0.97
5	18	3.2e-05	0.0024	18.1	4.7	1	23	370	392	370	392	0.99
6	18	5.8e-05	0.0044	17.3	5.7	1	23	398	420	398	420	0.97
7	18	2.8e-07	2.2e-05	24.5	4.3	1	23	426	448	426	448	0.98
8	18	1e-07	7.7e-06	25.9	2.4	1	23	454	476	454	476	0.97
9	18	5.9e-05	0.0045	17.2	6.7	1	23	483	505	483	505	0.97
10	18	0.0001	0.0078	16.5	6.5	1	23	511	533	511	533	0.98
11	18	9.2e-06	0.0007	19.8	4.5	1	23	539	561	539	561	0.98
12	18	6.7e-06	0.00051	20.2	8.1	1	23	567	589	567	589	0.98
13	18	5.4e-06	0.00041	20.5	7.6	1	23	595	617	595	617	0.97
14	18	6.1e-07	4.6e-05	23.5	7.7	1	23	623	645	623	645	0.98
15	18	0.00019	0.014	15.7	9.5	1	23	651	674	651	674	0.95
16	18	6.7e-05	0.0051	17.1	0.9	1	23	680	702	680	702	0.98
17	18	0.0011	0.087	13.2	4.4	1	23	712	734	712	734	0.98
18	18	8.4e-06	0.00064	19.9	1.6	1	23	740	763	740	763	0.96

Sequence Information

Coding Sequence: ATGCAGCACGTGAGCGCTGCCAGTTCGGCACCTTCGGTGGTCTCAGCACCGGTGGTGACCACTGGCGGTGGCACCACCATCAGCTTGGGCGGAGCACCGCCGTCATTATCAAGTGGCAAACATTCGTCAGAGCATCATAAAGAGGACGGCAGCAAGCCGCCACATCACGGCATTGAAATGTATAAAGTAAACATTGAGGATATTTCACAGTTATTTACGTATCACGAGGTCTTTGGCAAAATCCATGGCGATGTGGTCAATCATGTGGCGGCGGTACATGGCAGTCAGCTGCCACCACCGCAGTTGCCACCGCCGCCCCCCCTACCGCCACAGACGACGCATTCGGCAAGCGCAGCTGCAGCCGCAGCGGCGGCGTCCACAAATAATGCAGCCGTCGCTGCTGTAATGGCCTCGGCCAATGCAGCAGCCGCGGCAGCAGCGGCCGCCTCAGCAGCGGCAtcagcacaacaacagcaacaacaacaacagcagcagcaacaacaacaacagcagcaacaacaacagcaacaacaacaacagcagcagcaacaacaacagcagcaacagccagcGGCAAGCACAAATGCTGGAAGCCAGCAGGGTAGCGCCACGGTGACCACAACAAGCTCGGGCAGCAACGGGGGCAATAATAACTCGACAACGACGACGGGTGAGTTGCTAATGCCAAAAATGGAGGGCGGCATCCATGGCGTCGATGGGCAGTCGAGCGTTGCGTTGGCGCCGGATGGCACACCCATTGCGACTGGTACGCATGTGTGCGACATTTGTGGCAAGATGTTTCAGTTTCGCTATCAGCTGATTGTGCACCGCCGCTACCACAGCGAGCGCAAGCCGTTCATGTGTCAGGTGTGCGGTCAGGGTTTTACCACATCGCAGGATTTGACCCGTCATGGTAAAATACACATTGGCGGTCCCATGTTCACATGCATTGTGTGCTTCAATGTGTTTGCCAATAATACTAGCTTGGAGCGCCATATGAAAAGGCATTCAACGGACAAGCCATTCGCCTGCACCATTTGCCAAAAGACTTTCGCACGCAAAGAGCATCTGGACAATCATTTTCGTTCGCATACAGGCGAAACGCCGTTCCGTTGCCAGTACTGCGCCAAGACGTTTACGCGCAAGGAGCACATGGTCAATCATGTGCGCAAACACACGGGTGAGACGCCACATCGTTGCGATATTTGTAAGAAGTCCTTCACGCGCAAGGAACACTATGTTAACCACTACATGTGGCACACTGgtcAAACACCGCATCAGTGCGATGTCTGCGGCAAGAAATACACGCGCAAGGAGCACCTAGCCAACCATATGCGCTCCCACACCAACGAGACGCCGTTCCGTTGTGAAATCTGCGGCAAGAGCTTTAGTCGCAAGGAGCACTTCACCAATCACATACTCTGGCATACAGCAGGCGAGACGCCGCATCGGTGCGACTTCTGCTCCAAGACGTTTACGCGCAAGGAGCATTTGTTAAATCACGTGCGCCAGCACACTGGAGAGTCACCGCATCGCTGCTCCTACTGCATGAAGACGTTCACACGCAAGGAGCATCTGGTGAATCATATACGCCAGCACACGGGTGAGACACCGTTCAAGTGCACGTACTGCACGAAAGCGTTTACACGCAAAGATCACATGGTTAATCATGTACGGCAACATACAGGCGAATCGCCGCACAAGTGCACATATTGCACCAAGACGTTTACACGCAAGGAGCATCTAACGAATCATGTGCGCCAGCACACGGGCGATTCGCCACATCGCTGTAGCTACTGCAAGAAGACCTTCACCCGCAAGGAGCATCTGACGAATCATGTGCGCCTGCACACGGGCGACTCGCCGCACAAATGCGAATACTGTCAGAAGACGTTTACGCGCAAGGAGCATCTCAATAATCATATGCGTCAGCACTCCAGCGACAATCCGCATTGTTGCAATGTGTGCAACAAGCCCTTCACACGCAAGGAGCATCTGATTAATCATATGTCACGCTGCCACACCGGTGATCGTCCCTTTACCTGTGAGACATGCGGCAAATCTTTTCCCCTTAAGGGCAATCTGTTGTTCCATCAGCGTAGCCATACCAAGGGTCAGGAGTGCGAGCGTCCGTTTAACTGCGAGAAATGTCCCAAGAATTTCATATGCAAAGGTCACTTGGTTTCGCACATGCGCTCCCATTCGGGTGAGAAGCCGCACGCGTGCACACTGTGCAGCAAGGCTTTCGTCGAGCGCGGCAATTTGAAGCGCCACATGAAGATGAATCATCCGGATGCTATGATGCCGCCACCACCTGTGCATCCGCATCCGCAAATACCGGCTGGTGTGCTGACCCAAGTCAAGCAGGAAGTGAAACCGATCATAATTCCGCATCACTCGGCGACGACCACAATGCACACCATTCAGCAAATAACAGCgggcgcagcagcagctggcgcCGGTGCCGTCCAGTTAGCGCCAGGTCTGGTACCTTTGGTCACCAGTTCGCTCATCTCGCACAATGCCCAGtcgcagaagcaacaacaggcggcagcagcagttgccgcTCAACAGCAAGCGGCTGCGGCAGCGGCTGCCCAACAACAGGCCGctgcggcggcagcagcacaacaacaagcagcggccgcagcagctgcagcacatcaacagcatcagcatcaggtggctgcacagcagcaacaacagcagcaacaggctgcagttgctgcacatcaacaacagcaacagcaattgcagcagcaacagctgctgcagctgtccATACAGCAGGCcgcacatcatcatcaacagcatcagcagcaacaacaacagcagcaacagcaacatcatcaacaacagcagcagcagcaacaacaacaacaacaacagcaatcgcATCCGCAGGCAccaccacagcagcaacaacaacagcaacagccgccaCCGCAGGTGCCAATTGCATTGATAAGTGATCCGAGCGCGCTGGCACGTGCTGCCATGCAGCTGCAACATCTGCCCACAAATGTTGAACAGCATCCGGTGGTTTACTAG
Protein Sequence: MQHVSAASSAPSVVSAPVVTTGGGTTISLGGAPPSLSSGKHSSEHHKEDGSKPPHHGIEMYKVNIEDISQLFTYHEVFGKIHGDVVNHVAAVHGSQLPPPQLPPPPPLPPQTTHSASAAAAAAAASTNNAAVAAVMASANAAAAAAAAASAAASAQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQPAASTNAGSQQGSATVTTTSSGSNGGNNNSTTTTGELLMPKMEGGIHGVDGQSSVALAPDGTPIATGTHVCDICGKMFQFRYQLIVHRRYHSERKPFMCQVCGQGFTTSQDLTRHGKIHIGGPMFTCIVCFNVFANNTSLERHMKRHSTDKPFACTICQKTFARKEHLDNHFRSHTGETPFRCQYCAKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHYVNHYMWHTGQTPHQCDVCGKKYTRKEHLANHMRSHTNETPFRCEICGKSFSRKEHFTNHILWHTAGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCSYCMKTFTRKEHLVNHIRQHTGETPFKCTYCTKAFTRKDHMVNHVRQHTGESPHKCTYCTKTFTRKEHLTNHVRQHTGDSPHRCSYCKKTFTRKEHLTNHVRLHTGDSPHKCEYCQKTFTRKEHLNNHMRQHSSDNPHCCNVCNKPFTRKEHLINHMSRCHTGDRPFTCETCGKSFPLKGNLLFHQRSHTKGQECERPFNCEKCPKNFICKGHLVSHMRSHSGEKPHACTLCSKAFVERGNLKRHMKMNHPDAMMPPPPVHPHPQIPAGVLTQVKQEVKPIIIPHHSATTTMHTIQQITAGAAAAGAGAVQLAPGLVPLVTSSLISHNAQSQKQQQAAAAVAAQQQAAAAAAAQQQAAAAAAAQQQAAAAAAAAHQQHQHQVAAQQQQQQQQAAVAAHQQQQQQLQQQQLLQLSIQQAAHHHQQHQQQQQQQQQQHHQQQQQQQQQQQQQQSHPQAPPQQQQQQQQPPPQVPIALISDPSALARAAMQLQHLPTNVEQHPVVY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00560429;
90% Identity: iTF_00560429;
80% Identity: -