Sfla012198.1
Basic Information
- Insect
- Scaptomyza flava
- Gene Symbol
- retn
- Assembly
- GCA_003952975.1
- Location
- RKRM01000062.1:120972-129740[+]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.6e-26 4.6e-23 81.3 0.0 2 89 20 105 19 105 0.96 2 2 1.2 2.3e+03 -1.1 0.2 20 40 264 293 223 308 0.59
Sequence Information
- Coding Sequence
- ATGCTCATCTCCGACGATCAAATACAGGAGCTCTATGAAATCAACGATGATCCCAAGCGCAAGGAGTTTCTTGATGATTTGTTTTCGTTTATGCAAAAGCGAGGCACGCCCATCAATCGTTTGCCCATAATGGCCAAATCGGTGCTGGATCTATATGAGCTATATAATTTGGTGATCGCACGAGGCGGTTTAGTCGATGTCATCAACAAGAAGCTATGGCAGGAGATTATCAAGGGTCTGCACCTGCCATCGAGCATAACAAGTGCAGCATTCACATTGCGTACACAATACATGAAGTATTTGTATCCGTACGAGTGCGAGAAGAAGAATTTGAGTACACCAGCTGAACTGCAGGCGGCAATTGATGGCAATCGCCGCGAAGGACGTCGTTCCAGCTATGGCCAATATGAGGCCATGCACAATCAGATGCCAATGACGGCCATATCGCGCCCACCGTTGCCGGGTGGAATGCAACAGATGTCGCCACTGGCGCTTGTAACACACGCAGCAGCTGCCAACAATCAGCAGGCGCAGGCTGCGgccgcagcggcagcagcacaTCGTCGATTGATGGGTGGACCGGCGTTTGGTCAGATGCCCAATTTGGTGACACAAGAGATTGAGAATCGTATGATGGAGTACCTGCAGCTTATACAGGCAAaaaaggagcagcagcaaaatgcgTCAGTACTGGGCGCTACACATCcccaccaacagcagcagcaacagcagcagcagcagcaacaacaacaatcgctgcatcatcatcaacagcaacaacaacaacaacagcagcgtcAACGTTCCCAAAGTCCTGAGCTTAGTACTCGTGATGCACTGAGTGCGCAAGTGGCGCTTTGGCATATGTACCACAACAGTAGTCCAACCGGTTCGGCGCACACATCACCGCAGCAACGCGAGGCTTTAAACCTCTCCGATTCGCCACCAACTTTGAATTTGAATCACATCAAACGTGAACGTGAACGCGATCCAACGCCCGAGCCCACAGATCTTGACGAATCGGTACATCAGCCGCCGCCGGCAAAGCGTGTGGGCAGCGGTCTAATGCCGCCCGGTTTTCCCGCTAACTTTTACTTAAATCCACACAATATGGCCgctgtggcagctgctgctggttttcATCATCAGGCCGCAGCCAacagtcatcatcatcatcagcatcagcagcagcaacagcagcacgaTGCAACATCGGAAGGTGAACCCGATGATGATTATGGCAATGGAGAGCACAATACCAGCGGCAATTCAACGTCCCTGAACGATGAAAGTGAACCACAGCAACTGAATGgacatcatcaccatcatcatcatcatcatgatgatCATGATCATGATCATGATCACCATAGTAATCATCAGAATCATTTGGATAAATCGGATGATTCGGCCATTGAAAACTCACCCAGCacatcgacaacaacaacaacgacagcatcGCATCGCCACAGTTCGCCAGTGTCCACCAAAAAGAAGAGTAGcgtcaataacaacaacagcaacaacatcaacaacaacaacaacagcaccaagaCACAATCCTCAAGTCCAAAGGATGCAGGCAACAACACTGGAATTGGCAGCAGCGATGTTAAGCTAAATCCTCTCGAAACGCTTAGCCTGCTTTCGGGCATGCAATTTCAAGTGGCACGCAATGGCATCAGTGCAAACGGTGAACAGCAGTTGATTGTCAATCTCGAGTTGAATGGCATTAAATATACGGGTGTGCTGGTGGCATCCacaggagcaacagcaacaaaagcaacagcatcGGTCAGAACAGAGAATGAGTTGCAGCAGGAGCAGCCAGAGTTGCCAATGGGAGGGGTAGGGGTTGGGTTAAGTGTGGTTGGTGCAAGTCTGCTCAAAGATGCTGTAGTCAGTTCGTAA
- Protein Sequence
- MLISDDQIQELYEINDDPKRKEFLDDLFSFMQKRGTPINRLPIMAKSVLDLYELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYPYECEKKNLSTPAELQAAIDGNRREGRRSSYGQYEAMHNQMPMTAISRPPLPGGMQQMSPLALVTHAAAANNQQAQAAAAAAAAHRRLMGGPAFGQMPNLVTQEIENRMMEYLQLIQAKKEQQQNASVLGATHPHQQQQQQQQQQQQQQSLHHHQQQQQQQQQRQRSQSPELSTRDALSAQVALWHMYHNSSPTGSAHTSPQQREALNLSDSPPTLNLNHIKRERERDPTPEPTDLDESVHQPPPAKRVGSGLMPPGFPANFYLNPHNMAAVAAAAGFHHQAAANSHHHHQHQQQQQQHDATSEGEPDDDYGNGEHNTSGNSTSLNDESEPQQLNGHHHHHHHHHDDHDHDHDHHSNHQNHLDKSDDSAIENSPSTSTTTTTTASHRHSSPVSTKKKSSVNNNNSNNINNNNNSTKTQSSSPKDAGNNTGIGSSDVKLNPLETLSLLSGMQFQVARNGISANGEQQLIVNLELNGIKYTGVLVASTGATATKATASVRTENELQQEQPELPMGGVGVGLSVVGASLLKDAVVSS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00570178;
- 90% Identity
- -
- 80% Identity
- -