Basic Information

Insect: Scaptomyza cyrtandrae
Gene Symbol: ush
Assembly: GCA_035044605.1
Location: JAWNNS010000650.1:6102153-6106695[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.049 3.7 8.3 0.0 1 20 212 231 212 233 0.89

2 9 0.00029 0.021 15.3 0.8 1 23 291 313 291 313 0.98

3 9 0.051 3.8 8.2 1.0 2 21 361 380 361 381 0.92

4 9 0.05 3.7 8.3 2.9 2 21 756 775 755 776 0.93

5 9 0.0092 0.68 10.6 0.0 3 21 826 844 824 845 0.91

6 9 0.0066 0.49 11.0 0.0 2 23 914 935 913 935 0.98

7 9 0.0039 0.29 11.8 1.3 1 23 941 963 941 963 0.99

8 9 0.0014 0.1 13.2 1.9 1 23 1031 1054 1031 1054 0.96

9 9 0.31 23 5.8 0.7 2 20 1164 1182 1163 1184 0.91

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.049	3.7	8.3	0.0	1	20	212	231	212	233	0.89
2	9	0.00029	0.021	15.3	0.8	1	23	291	313	291	313	0.98
3	9	0.051	3.8	8.2	1.0	2	21	361	380	361	381	0.92
4	9	0.05	3.7	8.3	2.9	2	21	756	775	755	776	0.93
5	9	0.0092	0.68	10.6	0.0	3	21	826	844	824	845	0.91
6	9	0.0066	0.49	11.0	0.0	2	23	914	935	913	935	0.98
7	9	0.0039	0.29	11.8	1.3	1	23	941	963	941	963	0.99
8	9	0.0014	0.1	13.2	1.9	1	23	1031	1054	1031	1054	0.96
9	9	0.31	23	5.8	0.7	2	20	1164	1182	1163	1184	0.91

Sequence Information

Coding Sequence: ATGCGTTTGCGGGATAAAAATAACCGAACAGAGCCAAACTGGCCAAACGGTCGACGGCTCGAACGGTTTGAACAGTTTGACTCTTCGACTGGTCGACAACCTCGAAGACTTTTGGTCGTTGTTTATTCCAAAGATTTGGGCGCACATGAGCTGAGCGAggagaagcaacagcagcagcaacatcaactacAGCTCGAAGACGAGCAGCATTCCAACAACTCCTCCGCCTCCCAGCCAATTGAGACTGACATGGAGCAGGAGCTAATCGAGGCACAAGACGACGAGGTAGCTCAAGAGGATTCCAGCGAGCAGAATTTGGCGGAAAACacgacagcaacgacaacgccTCCGCGCAGCCCAACGCCTGAGCTCATACCGAAGCTAGAGCGAGCTGATACGCCACCCTCCGTGCCAGCCACGCCCAGTCCGCCACCTCGTACGCCCACGCCGCCGCCACGTGTGCTGCCCAAGCTGCGACTCAATGCATTGCTTTGCTCCGATCCAGCACTGAAACCCGATGCCAAGGAGCTTAAACTGCACGAGTCAAGATTATTGGGTCCACCACCCAAGccggagcagcagcaacagcagcaaagtcTTCCAGAGGTGGAGCCACTGCTGAAGCCGGCACGATTTATGTGCCTGCCCTGCAGCATTGCTTTCAGTTCACCCTCAACGCTGGAGGCGCATCAAGCCTACTATTGCTCCCATCGCAACAAGGATGCCGAAGAGGAGACAAACACTTCGGGTGATAAGGTGGCTTCCAACAGTGGCGGCTCCTCCAACACCAATGCGAACAGCAACTCCAGCGGTTCCAGTGTTGGTACAGGTTCCGAACCACCCAACAAGGTGTCACGAATTGGAAAACAATACGCGTGCACCCAATGCTCCTACAGCGCCGACAAGAAGGTCTCCCTCAATCGACACATGCGCATGCATCAGACATCACCAGCGGCGCCCAGCTTAAATAGTTTAACCAGCCTAACAGCGAATggtgttgttgccgctgcagccgccgcagctgcagctgctgcagcaggtGCACAGCTCGAGGAGAGCTCTAGTCAACAAATTGATCGCTACTGCAGCGACTGTGATATCCGCTTCAACAATATCAAGACCTATCGAGCCCACAAGCAGCATTATTGCAGCTCTCGTCGCAGCGACGGACATCTGACGCCTAAGCCAGAGGCGGGTGGCATCACTGGAACCGGAACTGGTGGAGTTGCTGGTGCTGGagctgcagcagttgctgctgttgccgccggCAAGCATAGTCCACAAACGCGCAACAAGACACCAACGCCAGcaatggttgctgctgctgctgccgccgctgctgcagcagctgcctcgTTGCAGGTGACTCCGCCGCAACCCTTTCTGGCGCTGCCTACCAATCCAATAATCATAGTGCCCTGCTCACTTATACGTGCAGCTAGTTTGATACCGGGGCCACTCACAACCTCCACGTCAGGCATTGTGAATCCGGAATCCACGTGCTTTACACTCGACAATGGCGCTCTGAAGCCTCTAGCCACGGCTCTGAATATAAATGCGTTAGGTGgcagtgccacgcccacacctATGCATAGCAGCAATCAAATACCAATTCCCGCTCTAGAGTCAGATCGTCCAGATCGTGTTGTTAGCAACGTGAACAACCAAGAAGCCGAACCCAAAAACAGTCCACCAGAACCCAAACGCAAGGAAGCAAATAGCACACGTGAGACAACGCCTCTGGATTTATCGCTGAGACGCTCACCAATTTCCGTTCTACTGCAACGCCAACGTCTCGTTCGCTCTGCCGCCGCGCTGCTCGAGGCCGAAGATGCTGCTGGCAAGGATCATCTGGAACGCATAAGTGGCGGAAGTGTAACGCCCGAGCAAATTGTTTGCGCACCCTCGTTACCCAGCAGCCCGTCGATGAGTCCGTCGCCCAAGCGACGTGCGTTGAGTCCACGGAGCTCTGGAGCTGGTAGTGCTTCATCGATGTCGCCGCCGGCATCTCATCTGCTTGACAATCTGCCACCATTGCGTTCCCTAATGCCCTCCGATTTTGCGCTGTCCGAATCGCTGCTGGCCAAAACTAACCCTGAGCTGGCTCTCAagttggcagcagctgctgcggcAGCTGTGGCAGGCAGCAGCTCAGCAGAGCTGGCCAAGCTGGGTTTTCCAggagcagcaactgcaaatcCTTCTGCTGCCGCACCACCTCCGGCACAGAATGCACCACAGATCTATGTGAAGCAGGGCGTCTCCAAGTGCAAGGAATgcaatattgttttttgtaaatatgaaAACTATTTGGCACACAAGCAACATTATTGCTCGGCGCGCAACCAGGAGCCGGGTCTGGATGGAGATGCCTCCAAGAGTGCGGTAACGCCACCCAGTGGTCTTTCCTCTGGTGGTGGCAATGCTGGCGCCTCTGCTGCCGAAACCACTCCAGTCGCCTATCAACAGCTCATTTGCGCAGCCTGCGGTATTAAATACACCTCACTGGATAATTTGCGTGCACATCAGAATTACTACTGCCCGAAAGGTGGCGCTGCTGCAAATGCTGCAACACCAGCTGAAGCTACACCAGCACCACAGCCACCAGTCTCGCAACCCAAGGAGAAGTGTTTGAAGTGCAAGACACACCATGAGCATGGCCAGAGCTGTCCTCCACCCCCGCCAACACCACAACTGCCTGCTCCCTCATCCATCTCTGCCAACTCGAATAGCGTTAACAAGTGTCCCGTTTGTGGTGTTGTTAGTCCAACTGCTGCCCTCGCTCGCAAGCACATGGAGATGCACGGCACTGTGAAGGCTTTTCGCTGTTCCATCTGTCAGTATAAGGGAAATACGCTGCGTGGGATGCGCACCCACATTCGCACCCATTTCGATAAGAAGACCAGCGATGTTAATGAGGAACACTACATGACTTGCATCTTTGAGGAGGAcgtggcagctgcagcagctgccgttGCAGCACCTCCAACTCAAGCATTGGCTCTTGATCTCCCTGCTgtggcagcggcggcagcagcagcagcggcggctgCGGCTCAAGAGCAATTGGAACAGCATCCGGCACAGCTTTTCAATTGTGATCATTGCAATTATGCCTCAACATACAAAGGCAATGTGCTGCGTCACATGAAACTACTACATCCACATGTGGCCATCAGTTCACCCTCGATATCACCCGAGTCGCGTGAACACGAAGCCAATCCACATGCACTGCCCGAAGTAGCTGTAGTTAATGGGGATCGGGATGTAGCAGCTGTGGGCAGCTTTCATATTAAAACGGAGCCGCTCGAGCCAGCTGTCGCCACTTTAGGTCTGGTGCATGAGAACAACAATTCACCCATTGGCACACCACATACCCACATTAAAGCTGAACCCATGGAGCTGGGCGTAGATGTGTCAGTACCAACGCTACCACCACCACTTGCCAACTCTCCGCTTGGCCCTAGCGCTGCTGAGGCAATGAAGAAATACTGCTCCACCTGCGACATATCGTTTAACTATGTAAAAACGTTTTTGGCACACAAACAATTCTACTGCAAGAGCAAGTTGCATCGGCCGGAGGCAAATGATAGCCCAAGTCCCACAGTTGGTGGTGGTGCCTCAATGCCTCTGCAATCGCCCAGCgagctgctgatgctgcagaAGAACAAGGAGAACTTGCAAGAGGCGGCCATTTGA
Protein Sequence: MRLRDKNNRTEPNWPNGRRLERFEQFDSSTGRQPRRLLVVVYSKDLGAHELSEEKQQQQQHQLQLEDEQHSNNSSASQPIETDMEQELIEAQDDEVAQEDSSEQNLAENTTATTTPPRSPTPELIPKLERADTPPSVPATPSPPPRTPTPPPRVLPKLRLNALLCSDPALKPDAKELKLHESRLLGPPPKPEQQQQQQSLPEVEPLLKPARFMCLPCSIAFSSPSTLEAHQAYYCSHRNKDAEEETNTSGDKVASNSGGSSNTNANSNSSGSSVGTGSEPPNKVSRIGKQYACTQCSYSADKKVSLNRHMRMHQTSPAAPSLNSLTSLTANGVVAAAAAAAAAAAAGAQLEESSSQQIDRYCSDCDIRFNNIKTYRAHKQHYCSSRRSDGHLTPKPEAGGITGTGTGGVAGAGAAAVAAVAAGKHSPQTRNKTPTPAMVAAAAAAAAAAAASLQVTPPQPFLALPTNPIIIVPCSLIRAASLIPGPLTTSTSGIVNPESTCFTLDNGALKPLATALNINALGGSATPTPMHSSNQIPIPALESDRPDRVVSNVNNQEAEPKNSPPEPKRKEANSTRETTPLDLSLRRSPISVLLQRQRLVRSAAALLEAEDAAGKDHLERISGGSVTPEQIVCAPSLPSSPSMSPSPKRRALSPRSSGAGSASSMSPPASHLLDNLPPLRSLMPSDFALSESLLAKTNPELALKLAAAAAAAVAGSSSAELAKLGFPGAATANPSAAAPPPAQNAPQIYVKQGVSKCKECNIVFCKYENYLAHKQHYCSARNQEPGLDGDASKSAVTPPSGLSSGGGNAGASAAETTPVAYQQLICAACGIKYTSLDNLRAHQNYYCPKGGAAANAATPAEATPAPQPPVSQPKEKCLKCKTHHEHGQSCPPPPPTPQLPAPSSISANSNSVNKCPVCGVVSPTAALARKHMEMHGTVKAFRCSICQYKGNTLRGMRTHIRTHFDKKTSDVNEEHYMTCIFEEDVAAAAAAVAAPPTQALALDLPAVAAAAAAAAAAAAQEQLEQHPAQLFNCDHCNYASTYKGNVLRHMKLLHPHVAISSPSISPESREHEANPHALPEVAVVNGDRDVAAVGSFHIKTEPLEPAVATLGLVHENNNSPIGTPHTHIKAEPMELGVDVSVPTLPPPLANSPLGPSAAEAMKKYCSTCDISFNYVKTFLAHKQFYCKSKLHRPEANDSPSPTVGGGASMPLQSPSELLMLQKNKENLQEAAI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00538480;
90% Identity: iTF_01324435;
80% Identity: -