Scyr007971.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Scaptomyza cyrtandrae
Gene Symbol
RREB1
Assembly
GCA_035044605.1
Location
JAWNNS010000639.1:13392795-13399119[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 13 0.0057 0.42 11.2 0.6 1 21 258 278 258 280 0.96
2 13 0.00016 0.012 16.1 0.1 1 23 290 312 290 312 0.98
3 13 7.8e-05 0.0058 17.1 7.3 1 23 318 340 318 340 0.98
4 13 0.23 17 6.2 1.7 2 20 566 584 566 586 0.93
5 13 0.014 1 10.0 0.2 1 23 739 761 739 761 0.97
6 13 1.2e-05 0.00089 19.7 0.7 1 23 771 793 771 793 0.99
7 13 0.00081 0.06 13.9 2.0 1 23 799 822 799 822 0.97
8 13 0.0029 0.21 12.2 2.0 1 23 1097 1120 1097 1120 0.95
9 13 8.4e-05 0.0062 17.0 0.3 2 23 1470 1491 1469 1491 0.97
10 13 0.14 10 6.9 6.3 1 23 1497 1520 1497 1520 0.97
11 13 9.1 6.7e+02 1.2 3.4 1 23 1644 1667 1644 1667 0.78
12 13 0.0082 0.61 10.7 0.5 3 23 1732 1752 1730 1752 0.96
13 13 0.0013 0.096 13.3 4.8 1 23 1758 1780 1758 1780 0.99

Sequence Information

Coding Sequence
atgcTGGctacacaccaacaacaacaacaacaacagccaccagcaacaacaacagcagtcgcaacaacaacaacagtaagaGATAATGATGTTGCTCTCGAGTTAGAGCGACAGCGTCGTGATTCAAGCACCTCAGAATCCTCGCTGGAACATTTGGATTTGGGTCGAACACCCAAAaagctcagcagcagcagcggtgcGCCACAGCCAACGTCGACGCCACACAATGCcgtgtcagcagcagcagcagcagcgacagcgacagcgtcGTCGCGCAAACGCAAACTGCgaccgcaacaacagcaacaattgccgCTGTCCGATgaggaacagcaacaacagcagcaacagcaactgttagATTCCTCCACCCAGCGACCGCGTCACAAGCAGAGACGCAGCGCAGTCGCAGCTGCTGCCAGCGCCAGCATCGTTGTCGACTACAGCGCCAGCGGCGACGCTAGTTCGCTGCGCAAAAAGTTTCGGCTTAATCGCAGCACAGCCAGCAGCAACGGTGCGGCTGCCAACGGTGATCTATCCGAATCGGGTTTCGTTGACGGCAGCACTCACAGTGCTATTCTGCTCACtagcaccaacagcaacaacaacacaaacaacaacaacaacaacacaaacaacagcgCAGTCACAGCGTCAGCAGCACAGCAAGCATCAAGCACTAGCAGTTCGGGTGGCTCATCGCCCGAGGGTCTCTCCTCGTACCCATCAAGCGCCGAATCGGGCATCAGTGCCGGAGATGAGCACATGAAATATGTGTGTCCCATCTGTGAGGTTGTCTCGGCCACGCCCCACGAATTCACCAATCATATACGTTGCCACAATTATGCCAACGGCGACACCGAGAACTTCACCTGCCAAATCTGCTCCAAGGTTCTCTCATCGGCATCCTCCCTAGATCGTCATGTGCTAGTTCATACGGGAGAGCGTCCGTTTAACTGTCGCTACTGCCACTTGACCTTCACCACGAATGGGAATATGCATCGTCATATGCGGACACACAAGCAACATCAGACatcgcaacagcagcaatcgcaacaacagcaatcccaacagcagcaacaatcgcaaacaaaacagcaacgcCAGCAACACGGAGGAGCAGGAGCAACTGGCTCGGGAACGGGATCgggattgggattgggatCGGGtgtacagttgttgttgccagctcGTGCGGAGAGCTATGAGAGTGATGCCAGCTGCTCGACAGATGTGTCCAGTGAGGCGAACAGTCACAGCGATAGCAACAgtaatcacaacaacaacaatacacacaaaacaaacaacaacaacaataataataacaacaatgaggATGAAATGGAGCTGGAGAATGAGATAAAGCAGCGACGCCGCAAAACCctgaataacaacaacaacaacaacattgtaaGAGATGAACATGATCGGATGGAGGGGGAGGAGGACGAGGAGGAGGATCGGAATGATGATGATTCGGATGTGGATAGTGTTGATAGCGTTGCCCAGGTCATAACCAGTACTCCAGATGTTGCAACTCTGCTCGCCTCGGGTGGCACCTCGCCCACCCACTCGCAATCGCCCTCACCGCCCCTACTCCGGCTGCAGAGCTGCCCGGCCTGCAATATGGGTGAATTTGAATCTGTGCCTGCGCTGTGCGCTCATTTGGATGCCGAGCATTCGGACATACCGGCCAAGTGTCGGGAGTGTGAGGTCATCTTTGCCACACATAGACAGCTGCAGGCGCACAGCTGTCGGGGTTTACCGCCGCTTCTCGGTGTTAGTTCCTCCCCGCTGCACAAGCAGGAGGAAGACGAGgaggacgacgacgaagaccagcaccaccaacaccagGAGGAAGAGGATGATAATGATGGGGATGGGGATAGGGATGGGGAGAAGGAACAGTTGGAGCAGCGAGAATGTGAAGACTTCTTTCAGCAACTGTACCTCAAGAACAAAGCCTCAACAGCGACAGCCCTACTACCCTCCCCCATCAAACATGAGCCGACGGATCAGCGTCAGGATCTAGCCGATATTCAAAGCATACTTAACATGACCAGCTCCAGCTGCACCTCAAGCTTTCTGCGCAACTTCGAGCAATCGGTTAACACACCCTGCTCCAGCCAGTACAGCGTGGATGGACGCGATGGCGAAGAGGAGGCACAGGATGCCTTCACCAGCGAATTCCGACGCATGAAGCTACGCGGTGAGTTTCCCTGCAAACTGTGCACCGCCGTCTTTCCCAATCTGCGTGCGTTGAAGGGACACAATCGCAACCATCTATCGGAGGTGGGAGCTACCGGACCCTTCCGTTGCAACATGTGCCCCTATGCCGTCTGCGACAAGGCAGCTCTGGTACGTCACATGCGCACCCACAATGGGGACCGTCCGTACGAGTGTGCTGTGTGCAATTATGCCTTCACCACCAAGGCCAATTGTGAGCGACATTTGCGCAATCGTCATGGCAAGACGAGTCGCGAAGAAGTCAAGCGTGCCATTGTCTATCATCCGGCCGAGGATGCCAGCTGtgaggacaacaacaataggtCACGTTCCGATGGGGACCTTCTCCCCGAAGGtggtaatggtaatggtggtggtggtggttatCGTTGTGCCACACCCACAGAGCATAGTTCCTCGGCCAGTTCGTCGCAGTCACAGCTAAAGCACATGTTGCTGGCGGACGCAACAGCCACGACAGCATCaccagcaacagtagcagcaacagtagcagcaacacAGCAACCACCGCTAAAGATCCAAGTAAAGAGCTTGGATCAGCTGGTGGATAAGCCGATGCCAGCTTTAGATCTGAGCATGGATGTCCTGGACTTGAGCAAGAAGCCCGCACAGCTGCTAACGGAGCAAAGGGAGCAGAGGGAGCAGCTCGAAAGACATGAATTGctactgcaacagcaacagcaacaacagccgcaacaacaacaacagcagcagcaacagcaacaattgtttgGCGCTGGTGATGCAGCCACACAGTACatgcaacagctgttgcgcAACTTTATGTTGCAACAATCACCTGGATTTCCCTTCTTTGGCTTTATGGCCCCACCGCCACCAGCAGCatcagttgcagctgcagcagcagcagcagcagagaaattattaccaacaacaaatgcaactgcaaatgcaTTGCCGCTGTCACTACCAGTGCCTCTGCCCCTGCCGATGCCAGCCGGTGGACCGGTGAAGATGGTCATCAAGAATGGTGTCCTGATGccgaaacaaaagcaacgtcGCTACCGCACCGAACGTCCCTTTGCCTGCGAGCATTGCTCGGCGCGATTCACTCTACGCTCGAACATGGAGCGACATGTGAAGCAGCAACATCCCAACCACTATGCAACACGGCAGCGCAGTGGACATCATGTGATGCGTGGACGTGCTGCATCCAGTCAGGCTCAAGCTCAAGCTCATGCGGCTGCAGCGgcagccgctgcagcagcaatgaGCAATCTcacccaacagcagcagcaacattcccattcccatcaTCATGTTCATGCACCGATTTCCGAGCAGGTGAAATATGCGATCCTGACACAACAGTTGAAGGCGCGCAAGGATACCGATCTGTTGCAGCAGGCACTCGCACATGGCTCTAGTAGTGTCGTTGCAAATCCTTTTCTACATTTTGgctacaccaacaacaacaacaacaatatcagtaacagcaacaagcaacaacagcaacagttgcaggtGCTGGATGATGATGAGCCGCCCAAACTAATCATAGACGAGGATGATGACGATGTCGAGGGTTgtgtcgacgacgacgaagaggaggaggaagaggagCAAGATTTTGATATGGACGAAGATGAGGAGCAGCAAGCTGAGGAGatcgaacagcagcagcacatgcAAGAGGAGACCAAGACTATCAAACCCATTGAGGCAGCCAAAAAGGTTGCCGAAATCATTCTCGAGCAAGCAACCAAGGAGCAAGTGGATCAAcagccaacaccaacaacaccaccaacatcACAATTGGAgaagacacaacaacaacaacaacaaaaacaacaagttgcaccaccaacaacaatgaagaCAATGATTGCCCAAGCCGAATCGGTGGCCAAATCCCTGAAAGATGTCGCCAGCTCACCGTTCAAGGATGAATCTCAGGATCTGGTGCCGGTAGCCAAACTAGTGGACAATGCAACCAGCAATCAGGTGTCGTTCAACAGCTATTTTCGACCCAGCGACGTTGCCAATCACATGGAGCAGAGCGATGAGGAAGGTCTCGTTGCGAGTGGTAGCGCCAGTGAGAGTAACAATTCCGGAACGGAAGATGTTACCAGCtcaagcagcagctgtggcaatgatacaaagaaaaagtCTGCATACAGTTTGGCACCCAATCGGGTCAGTTGTCCCTATTGCCAGCGCATGTTTCCTTGGAGCAGCTCGCTGCGTCGACACATCCTCACCCACACGGGACAGAAGCCCTTCAAGTGTTCCCATTGCCCGCTTTTGTTCACCACCAAGAGCAACTGCGATCGCCATCTGTTGAGGAAGCATGGAAATGTCGAGTCCGCAATGTCCGTGTATGTGCCAACCGAGGATGTGAGTGAGCCCATACCAGTGCCCAAGTCGGTGGAGGAGATCGAGCTGGAGGAGCAGCGCCGACGTCAAGCAGCCGAAGCTGAGCATGCCGAACGCGAACGTGAAAGGGAGCGCGAACGGGAGAAGGAACGGGAACGTGATCGTGAAcgggaacaacaacaattgattCAACAATTGCGTCAacaaatggctgctgctgctgcagcagctgcatctgTTGCGGTcgctgccgccgccaccgTTGTCGCCGTTGCTCCAGCTTCATCTCCATCTCCAGCACATTCACCACCCGTGTGTGGTGTGGAAACGAGCAGTGATCTGCCCTACAAGTGTCATCTATGCGAGTTCTCCTTTGGTGAACGTTTGCAGTGCCTGGAGCACATCAAGCAGTTGCATGCCCATGAGTTTGCACTCCTTCTTGCCAAGGGTGCAATCGAAACGgatgcacaacagcaacagttgttaGCTAATCCTCATTCGGATGatgaggcagcagcagcagcagcagctgcagcggcaGGGGCGTCATCTGTTGTTGGCATCAGATCGGGCGGCAAATATCCCGACTATAGCAATCGTAAAGTGATCTGTGCCTTTTGTGTGCGTCGCTTTTGGTCAACGGAGGATTTGCGACGACATATGCGAACCCATTCGGGCGAACGTCCGTTCCAGTGCGAGATCTGTTTGAGGAAGTTCACGTTGAAGCACAGCATGTTGCGGCACATGAAGAAGCACAATGGACGCAGTCACAACGGTGGTGAGCTGGATCATCAATCGGATTGCTCCGATGATGAACAATTGATGTCATGCTCGCCACCCACAACGCCAACacccaccaacaacaacaacagcaacacttgtcagaacaacaacaacaataccagcaacaataacaataacaacaacaacacaaagcaaGTACTGCGAGAACTTTTGGGCAAAGCGAACGAGTGGCGTATTAATCGTTTGGCTGCTGGCGAGCACAAGGAGAACATTTCCgaatcagcaacagcatcagcagcagcagcgacaacactggcctcaacagcagcagcagccacgaGTGTTGCCAGCGGTGATTTAATTGGTAATCTTTTGGGTATCAGTGATCAGGGCATACTCAATAAGTTGCTCTCCTCACCCGACGAAGCTGCCAAGCTTCTCGGCGTGgagaagtaa
Protein Sequence
MLATHQQQQQQQPPATTTAVATTTTVRDNDVALELERQRRDSSTSESSLEHLDLGRTPKKLSSSSGAPQPTSTPHNAVSAAAAAATATASSRKRKLRPQQQQQLPLSDEEQQQQQQQQLLDSSTQRPRHKQRRSAVAAAASASIVVDYSASGDASSLRKKFRLNRSTASSNGAAANGDLSESGFVDGSTHSAILLTSTNSNNNTNNNNNNTNNSAVTASAAQQASSTSSSGGSSPEGLSSYPSSAESGISAGDEHMKYVCPICEVVSATPHEFTNHIRCHNYANGDTENFTCQICSKVLSSASSLDRHVLVHTGERPFNCRYCHLTFTTNGNMHRHMRTHKQHQTSQQQQSQQQQSQQQQQSQTKQQRQQHGGAGATGSGTGSGLGLGSGVQLLLPARAESYESDASCSTDVSSEANSHSDSNSNHNNNNTHKTNNNNNNNNNNEDEMELENEIKQRRRKTLNNNNNNNIVRDEHDRMEGEEDEEEDRNDDDSDVDSVDSVAQVITSTPDVATLLASGGTSPTHSQSPSPPLLRLQSCPACNMGEFESVPALCAHLDAEHSDIPAKCRECEVIFATHRQLQAHSCRGLPPLLGVSSSPLHKQEEDEEDDDEDQHHQHQEEEDDNDGDGDRDGEKEQLEQRECEDFFQQLYLKNKASTATALLPSPIKHEPTDQRQDLADIQSILNMTSSSCTSSFLRNFEQSVNTPCSSQYSVDGRDGEEEAQDAFTSEFRRMKLRGEFPCKLCTAVFPNLRALKGHNRNHLSEVGATGPFRCNMCPYAVCDKAALVRHMRTHNGDRPYECAVCNYAFTTKANCERHLRNRHGKTSREEVKRAIVYHPAEDASCEDNNNRSRSDGDLLPEGGNGNGGGGGYRCATPTEHSSSASSSQSQLKHMLLADATATTASPATVAATVAATQQPPLKIQVKSLDQLVDKPMPALDLSMDVLDLSKKPAQLLTEQREQREQLERHELLLQQQQQQQPQQQQQQQQQQQLFGAGDAATQYMQQLLRNFMLQQSPGFPFFGFMAPPPPAASVAAAAAAAAEKLLPTTNATANALPLSLPVPLPLPMPAGGPVKMVIKNGVLMPKQKQRRYRTERPFACEHCSARFTLRSNMERHVKQQHPNHYATRQRSGHHVMRGRAASSQAQAQAHAAAAAAAAAAMSNLTQQQQQHSHSHHHVHAPISEQVKYAILTQQLKARKDTDLLQQALAHGSSSVVANPFLHFGYTNNNNNNISNSNKQQQQQLQVLDDDEPPKLIIDEDDDDVEGCVDDDEEEEEEEQDFDMDEDEEQQAEEIEQQQHMQEETKTIKPIEAAKKVAEIILEQATKEQVDQQPTPTTPPTSQLEKTQQQQQQKQQVAPPTTMKTMIAQAESVAKSLKDVASSPFKDESQDLVPVAKLVDNATSNQVSFNSYFRPSDVANHMEQSDEEGLVASGSASESNNSGTEDVTSSSSSCGNDTKKKSAYSLAPNRVSCPYCQRMFPWSSSLRRHILTHTGQKPFKCSHCPLLFTTKSNCDRHLLRKHGNVESAMSVYVPTEDVSEPIPVPKSVEEIELEEQRRRQAAEAEHAEREREREREREKERERDREREQQQLIQQLRQQMAAAAAAAASVAVAAAATVVAVAPASSPSPAHSPPVCGVETSSDLPYKCHLCEFSFGERLQCLEHIKQLHAHEFALLLAKGAIETDAQQQQLLANPHSDDEAAAAAAAAAAGASSVVGIRSGGKYPDYSNRKVICAFCVRRFWSTEDLRRHMRTHSGERPFQCEICLRKFTLKHSMLRHMKKHNGRSHNGGELDHQSDCSDDEQLMSCSPPTTPTPTNNNNSNTCQNNNNNTSNNNNNNNNTKQVLRELLGKANEWRINRLAAGEHKENISESATASAAAATTLASTAAAATSVASGDLIGNLLGISDQGILNKLLSSPDEAAKLLGVEK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01328068;
90% Identity
iTF_01328068;
80% Identity
-