Basic Information

Insect: Scaptomyza cyrtandrae
Gene Symbol: L
Assembly: GCA_035044605.1
Location: JAWNNS010000642.1:936679-943958[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 1e-05 0.00074 19.9 2.9 1 23 160 182 160 182 0.98

2 18 0.34 25 5.6 6.2 1 23 188 210 188 210 0.97

3 18 1.7e-07 1.2e-05 25.5 3.2 1 23 216 238 216 238 0.99

4 18 1.2e-05 0.0009 19.6 0.4 1 23 244 266 244 266 0.99

5 18 0.24 18 6.1 0.1 2 23 340 365 339 365 0.92

6 18 0.00018 0.013 15.9 0.4 2 23 396 418 395 418 0.96

7 18 0.027 2 9.1 0.7 1 23 483 505 483 505 0.97

8 18 0.0058 0.43 11.2 0.1 3 23 514 534 512 534 0.92

9 18 7.7e-05 0.0057 17.1 0.2 1 23 542 566 542 566 0.93

10 18 4.4 3.3e+02 2.1 0.3 2 20 572 590 571 591 0.91

11 18 5 3.7e+02 2.0 1.6 2 23 602 624 601 624 0.95

12 18 0.0025 0.18 12.4 1.1 1 23 670 693 670 693 0.97

13 18 0.0063 0.47 11.1 1.6 2 23 866 888 865 888 0.96

14 18 0.11 8.3 7.2 0.1 1 23 894 916 894 916 0.92

15 18 0.54 40 5.0 0.4 2 23 924 945 923 945 0.93

16 18 0.95 71 4.2 0.5 2 23 1044 1065 1044 1065 0.94

17 18 0.024 1.7 9.3 0.0 1 23 1075 1097 1075 1097 0.96

18 18 0.00049 0.036 14.6 1.3 1 23 1102 1124 1102 1124 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	1e-05	0.00074	19.9	2.9	1	23	160	182	160	182	0.98
2	18	0.34	25	5.6	6.2	1	23	188	210	188	210	0.97
3	18	1.7e-07	1.2e-05	25.5	3.2	1	23	216	238	216	238	0.99
4	18	1.2e-05	0.0009	19.6	0.4	1	23	244	266	244	266	0.99
5	18	0.24	18	6.1	0.1	2	23	340	365	339	365	0.92
6	18	0.00018	0.013	15.9	0.4	2	23	396	418	395	418	0.96
7	18	0.027	2	9.1	0.7	1	23	483	505	483	505	0.97
8	18	0.0058	0.43	11.2	0.1	3	23	514	534	512	534	0.92
9	18	7.7e-05	0.0057	17.1	0.2	1	23	542	566	542	566	0.93
10	18	4.4	3.3e+02	2.1	0.3	2	20	572	590	571	591	0.91
11	18	5	3.7e+02	2.0	1.6	2	23	602	624	601	624	0.95
12	18	0.0025	0.18	12.4	1.1	1	23	670	693	670	693	0.97
13	18	0.0063	0.47	11.1	1.6	2	23	866	888	865	888	0.96
14	18	0.11	8.3	7.2	0.1	1	23	894	916	894	916	0.92
15	18	0.54	40	5.0	0.4	2	23	924	945	923	945	0.93
16	18	0.95	71	4.2	0.5	2	23	1044	1065	1044	1065	0.94
17	18	0.024	1.7	9.3	0.0	1	23	1075	1097	1075	1097	0.96
18	18	0.00049	0.036	14.6	1.3	1	23	1102	1124	1102	1124	0.97

Sequence Information

Coding Sequence: ATGATGGCTTTAAAGATGTTGTATCGCGGTCATAGTTCGCGTTTGGAGAACTTAATTGAAAAGATTCAGGCCACCAAGGAGATTACAAATAACGATATGTACAGCACGCACACCTCCTCGAGCTATTCGCCAAGCATCTCGGATGGTACACTGACACCCAACTCGGTGCAGCAGCCAAAGTCCGAGGAACAACAAACCGATGAGTCCAAGGCAAATGGTGAAAGTCCTGCTATGGAGCAACAGGAACTGCCCAAGCCAAAGCGACCTGCTCATTtgcatcatcaccatcatcattatcatcatcagcaggcGCTGAAAATTGCCAACAAGCTGCGCAAAATCAACAAGGAAGCCAAGTTGGCTGCAGCCGCTGGTGCTGTAGCAGGACATGGAGGTGCTGGAACCGGAGCATCAGCCGCCGCCAACAAGTTTGATAAGTTGACAGGCGAAAGCATTAAAAGTCGCAGCGACGGCTCCTATCAGTGTCAGTTCTGTGATAAATCATTTCCGCGTCTCGGCTACTTGAAGCATCACGTGCAGAGCCATGCCGAACATTTGCCTTTCAAATGCGAATATTGCGCCAAGCTATTCAAACATAAGCGCTCCCGAGATCGTCATAAGAAGTTGCATACAAACGAGAGGAACTACAAGTGTCCGCATTGTGAAGCTGCTTTCTCAAGAAGCGATCATTTAAAGATTCATATGAAGACGCACGATATACAGAAGCCCTTTCAGTGCAGCATGTGCAATCGTGGCTATAATACAGCTGCCGCTTTAACCTCTCACATGCAGAAGCACAAGAAGAATGCTGCAATTCTGGCAGCTGGTGGTAATCCCAATGCTCTCAATTATAGTCCACGTTCCACGGGCTCTGCCTCAATCTCTAGCAATGGTAGTCTACACAAGCGTCGCTATGCCTTGGCACTCGCCTCGGATAGCAGTCCAAGTCGTCTGGAGTTTCCCAAGCGAGCTCGTGGTGGAGTAGTACCAACGACGCCTACTCCAACGCCCCTGCTTAGATGCAGTTACTGCAGTCCCAAAGTAATGGAATTCAGCAGTCTGGAGCAACTAAATTCGCATCTGCAAGCGGCACacgaacaacagcagcaactaggAGGAAGAAGCTCTACAACTATTGGCAACAACACGGAGCAAGTGGAACCTCCCACTAATGGTTTTCAACTCAATTGCGAATATTGCACAATGAAATTTGTGAATATTGCTGCACTCTTTCAACATATGCGAACGACCCATTTGGATCGTTTAAGTAGTCCAAATTCCTACTATGAACACTTTAATCGTCTGGCAACGGCAGGCACATTTAGTCCTCGTTTGGAGATGCCTAAAATAAAGCAGGATCTGCCAAGTCCACCAGCAGAAGAACTTCCGACGGATCTTAGCAGCAACAAGCGAAGAACTTTAACACCACCAGCGCCACCTGGCGTCTTTTTTTGCAACCAATGTAATGCCGGGCTGCCAGACTTTGAAAGCTTTCGCAATCATCTCAAAACACACATTGCGGAGGGCATGCAAATGATATGTCCCCACTGTGGCTTGAGTCTGCCGGAACAAAGCGAATTTGAACGTCATGTTGTGGCGCATTTTTTAATCACCGGCTCCGAGTTCAATTGTGGCGCCAGTTGTGGCAAATCCTTTACCAAATCGGAGGAACTGCAACAGCATTTAATCAGTGAACATGTTCAGACACTGCTAAAGTGTTCCATTTGCTCGGAGCTGTGTGAGAATCGGATGTCCATGCAGCTCCACTTAGCCTGTGCTCATAGTCAGGAGACGAAGTTGCTTCGCTGCAGTGCCTGCTTGGAACTCTTTCGCAACGATACAGATTTCCATGTGCATGTTAAGACGCGACATCAATTGGTCGGAGGAAGTGGTCCTGCTGGACAGCCCAATGCTTCTCCTGCGAATCCCTTGCAGTGCATGTTTTGTCGCGCCGTTTGTGCTTCGGAGCTAGAAATGCATTTCCATTTGGCGGCTCATGCGCGACAATTCCGTTGTCCCAGTTGCCCCGAGACGTTCCATGTGGAGTTCCTGCTCGATCGTCATATGCAGAGTCAGCATGGTGGTGTCAAGGATAAACAGCAGGAACAGGCCACAAATCCTATGGGCAGTCTGTATGTGAACGCTTTGCTGCCTCCTCTGGCGgctgccgctgcagctgctgctgctgccacaaataataatagtaatctGCATATCGATTACAATGTGGCATTTAAAGGACTCTTTGGTGGAGGCAACTCCACGCCCAACAATGCACAATCAGGGAACAAGTTTTACAGTCCATTGCAGGTCGATACCAGTGCTTTGAAGCCACAGCAGACCCCTCATCCCGCACTCATGTACGGTCTTAGTCAACGGTATTTGATGGAGATGTATGCTGCAAAGGCAACTTCACCAGCAGCCAATGCACCCGAACTACCGGCACAAGCAACTcaagcagcaaatgcaacGGCATCCGGTAGCACCGGTAGCAGTTACAGTTGTGGCATGTGTGAGCGACAAGATTTGCGTAGTGAGGCAGAGCTTCATTCACATCGGAAACTAGCTCATAATCTCAAGACGGGAGTCAGTTTGAGATGTGCCTACTGCTCGGGCAATTATAAGTCACGTGCGGAGCTGGAACAGCATATGAAGAGCTGTCACAATTCGAGCGGGAAACACAAGTGTCTCATCTGTGACGAGATCTTTCCATCGCCAGCAATACTTGCCGAGCATAAGCTGCAGCATTCGAAGGTGGGTCAGTCGGGTAAATGTGCCCATTGTGGTCAGCAGTTGGAGCATGTGGCTGCATTTCGTGCACACCTGGGAGAGCATGGTAATGATGGTAATTTACCCATGGCATGCATATGCTGCCGTCAAACTTTGCACTCTGAGTTTGAGCTAAGCTTGCATGCAAAGTTCCACACAAAATCTCCAAACAGTGGTAGCCTCCAGGAGCCTGTTTGTGCTCTGTGCTTGGAACCCTTGCCCGAAGCGGGAGAAACTGCCAAATTGTGTGACAAGTGCTGTCGCAAACATAATCTCAATGGTAAGAGAAACAACAAGGAAGCACCTCCAGTGGTAGCTCCTCAACAGCCATCAGCAACCACAGTGGGTTATCTGGAGAATCGATGTAATCTCTGCAAACTCATATTGCCACATGCTCAAAAACTCCAGGAGCACCTGGTGGAACATACGTTTGCCGGTACCGAACAGCGTGGTTTCAATTGCTACATTTGCTCAGCGGTATTTACGGCCCCCGGTGGTCTCTTAGCTCACATAGCGGAGCATGGTGCTCGACCCTATGATTGTAATTTGTGCCCAGAGAAGTTTTTCTTCCGTGCCGAACTCGAGCATCATCAGCGTGCCCATGAATTACGTCAAATCCCAGCAGCACCCAATCCACCACCTGCGGTACGTCCACCACCCAAACAGGAACATCACAGCTCGTCGGCCAGTTCACCCATTCTCAGTCCCAGTCATGTGAAGCAGGAGCTCTATGAATCAGAAACTGCAACCTCACCACAACAGCAAGAAGAGTCCACTGTCCAGGATGACGAGGAGTATATTGAAGTCGAGCAGGTTCCACATGAAACCCGCTCTAATGAGCTGTTATCCGGCGGACAGACCGAACGCTCCAGCAGCAGTGCCTGA
Protein Sequence: MMALKMLYRGHSSRLENLIEKIQATKEITNNDMYSTHTSSSYSPSISDGTLTPNSVQQPKSEEQQTDESKANGESPAMEQQELPKPKRPAHLHHHHHHYHHQQALKIANKLRKINKEAKLAAAAGAVAGHGGAGTGASAAANKFDKLTGESIKSRSDGSYQCQFCDKSFPRLGYLKHHVQSHAEHLPFKCEYCAKLFKHKRSRDRHKKLHTNERNYKCPHCEAAFSRSDHLKIHMKTHDIQKPFQCSMCNRGYNTAAALTSHMQKHKKNAAILAAGGNPNALNYSPRSTGSASISSNGSLHKRRYALALASDSSPSRLEFPKRARGGVVPTTPTPTPLLRCSYCSPKVMEFSSLEQLNSHLQAAHEQQQQLGGRSSTTIGNNTEQVEPPTNGFQLNCEYCTMKFVNIAALFQHMRTTHLDRLSSPNSYYEHFNRLATAGTFSPRLEMPKIKQDLPSPPAEELPTDLSSNKRRTLTPPAPPGVFFCNQCNAGLPDFESFRNHLKTHIAEGMQMICPHCGLSLPEQSEFERHVVAHFLITGSEFNCGASCGKSFTKSEELQQHLISEHVQTLLKCSICSELCENRMSMQLHLACAHSQETKLLRCSACLELFRNDTDFHVHVKTRHQLVGGSGPAGQPNASPANPLQCMFCRAVCASELEMHFHLAAHARQFRCPSCPETFHVEFLLDRHMQSQHGGVKDKQQEQATNPMGSLYVNALLPPLAAAAAAAAAATNNNSNLHIDYNVAFKGLFGGGNSTPNNAQSGNKFYSPLQVDTSALKPQQTPHPALMYGLSQRYLMEMYAAKATSPAANAPELPAQATQAANATASGSTGSSYSCGMCERQDLRSEAELHSHRKLAHNLKTGVSLRCAYCSGNYKSRAELEQHMKSCHNSSGKHKCLICDEIFPSPAILAEHKLQHSKVGQSGKCAHCGQQLEHVAAFRAHLGEHGNDGNLPMACICCRQTLHSEFELSLHAKFHTKSPNSGSLQEPVCALCLEPLPEAGETAKLCDKCCRKHNLNGKRNNKEAPPVVAPQQPSATTVGYLENRCNLCKLILPHAQKLQEHLVEHTFAGTEQRGFNCYICSAVFTAPGGLLAHIAEHGARPYDCNLCPEKFFFRAELEHHQRAHELRQIPAAPNPPPAVRPPPKQEHHSSSASSPILSPSHVKQELYESETATSPQQQEESTVQDDEEYIEVEQVPHETRSNELLSGGQTERSSSSA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00538445;
90% Identity: iTF_01328061;
80% Identity: -