Basic Information

Insect: Scaptomyza cyrtandrae
Gene Symbol: -
Assembly: GCA_035044605.1
Location: JAWNNS010000650.1:15102436-15109067[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 2.4e-05 0.0018 18.7 2.1 1 23 280 302 280 302 0.97

2 18 8e-06 0.00059 20.2 0.4 1 23 308 330 308 330 0.97

3 18 0.0012 0.087 13.4 0.9 1 23 336 358 336 358 0.95

4 18 1.7e-05 0.0013 19.2 3.1 1 23 364 386 364 386 0.97

5 18 3.9e-05 0.0029 18.1 4.7 1 23 392 414 392 414 0.99

6 18 7e-05 0.0052 17.2 5.7 1 23 420 442 420 442 0.97

7 18 3.5e-07 2.6e-05 24.5 4.3 1 23 448 470 448 470 0.98

8 18 1.2e-07 9.2e-06 25.9 2.4 1 23 476 498 476 498 0.97

9 18 7.2e-05 0.0053 17.2 6.7 1 23 505 527 505 527 0.97

10 18 0.00013 0.0093 16.5 6.5 1 23 533 555 533 555 0.98

11 18 1.1e-05 0.00083 19.8 4.5 1 23 561 583 561 583 0.98

12 18 8.1e-06 0.0006 20.2 8.1 1 23 589 611 589 611 0.98

13 18 6.6e-06 0.00049 20.5 7.6 1 23 617 639 617 639 0.97

14 18 7.4e-07 5.5e-05 23.5 7.7 1 23 645 667 645 667 0.98

15 18 0.00023 0.017 15.6 9.5 1 23 673 696 673 696 0.95

16 18 8.2e-05 0.0061 17.0 0.9 1 23 702 724 702 724 0.98

17 18 0.0014 0.1 13.2 4.4 1 23 734 756 734 756 0.98

18 18 1e-05 0.00076 19.9 1.6 1 23 762 785 762 785 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	2.4e-05	0.0018	18.7	2.1	1	23	280	302	280	302	0.97
2	18	8e-06	0.00059	20.2	0.4	1	23	308	330	308	330	0.97
3	18	0.0012	0.087	13.4	0.9	1	23	336	358	336	358	0.95
4	18	1.7e-05	0.0013	19.2	3.1	1	23	364	386	364	386	0.97
5	18	3.9e-05	0.0029	18.1	4.7	1	23	392	414	392	414	0.99
6	18	7e-05	0.0052	17.2	5.7	1	23	420	442	420	442	0.97
7	18	3.5e-07	2.6e-05	24.5	4.3	1	23	448	470	448	470	0.98
8	18	1.2e-07	9.2e-06	25.9	2.4	1	23	476	498	476	498	0.97
9	18	7.2e-05	0.0053	17.2	6.7	1	23	505	527	505	527	0.97
10	18	0.00013	0.0093	16.5	6.5	1	23	533	555	533	555	0.98
11	18	1.1e-05	0.00083	19.8	4.5	1	23	561	583	561	583	0.98
12	18	8.1e-06	0.0006	20.2	8.1	1	23	589	611	589	611	0.98
13	18	6.6e-06	0.00049	20.5	7.6	1	23	617	639	617	639	0.97
14	18	7.4e-07	5.5e-05	23.5	7.7	1	23	645	667	645	667	0.98
15	18	0.00023	0.017	15.6	9.5	1	23	673	696	673	696	0.95
16	18	8.2e-05	0.0061	17.0	0.9	1	23	702	724	702	724	0.98
17	18	0.0014	0.1	13.2	4.4	1	23	734	756	734	756	0.98
18	18	1e-05	0.00076	19.9	1.6	1	23	762	785	762	785	0.96

Sequence Information

Coding Sequence: ATGCAGCACGTGAGCGCTGCCAGTTCGGCACCTTCGGTGGTTTCAGCACCGGTGGTGACCACTGGCGGTGGCACCACCATCACCTTGGGCGGACCGCCGCCCCCAACACAATCTTTAGCAATTAGTGGCAGCAAACATACGTCGGaacataatcataatcatcatcataagGAGGACGGCAATAAGCCGCCACATCACGGCATTGAAATGTATAAAGTAAACATTGAGGATATTTCACAGTTATTTACGTATCACGAGGTCTTTGGCAAAATCCATGGCGATGTGGTTAATCATGTGGCGGCGGTGCATGGCAGCCAATTGCCACCACCCCAGCTCCCACCGCCGCCCCCCCTACCGCCACAGACGACGCATTCGGCTAGCGCGGCTGCAGCCGCAGCGGCGGCGTCACAAAATAATGCAGCCGTTGCTGCTGTAATGGCTTCGGCTAATGCAGCAGCCGCGGCTGCAGCGGCCGCCTCAGCAGCGGCatcagcacaacaacaacaacagcaacaacaacagcagcaacaacaacagcaacaacaacagcagcagcaacaacagcagcagcaacaacaacagcagcagcaacaacaacagccagcaATTAGCACAAATGCCGGAAGCCAACAGGGTAACGCCACAGCGGTGACAACCACAAGCAGCTCGGgggcaggcagcaacaacaacagcaataacaacgggggcagcaataacaactcGACAACGACGACGGGTGAGTTGCTAATGCCAAAAATGGAGGGCGGCATCCATGGCGTTGATGGTCAGTCGAGTGTTGCATTGGCGCCGGATGGCACACCGATAGCGACTGGTACGCATGTGTGCGACATTTGTGGCAAGATGTTTCAGTTTCGCTATCAGCTGATTGTGCACCGCCGCTACCACAGCGAGCGCAAGCCGTTCATGTGTCAGGTGTGCGGTCAGGGTTTTACCACATCGCAGGATTTGACCCGTCATGGCAAGATCCACATTGGCGGTCCAATGTTCACATGCATTGTGTGCTTTAATGTGTTTGCCAACAATACTAGCTTGGAGCGCCATATGAAAAGGCATTCAACGGACAAGCCATTCGCCTGCACCATTTGCCAAAAGACTTTCGCACGCAAAGAGCATCTGGACAATCATTTTCGTTCGCATACGGGCGAAACGCCGTTCCGTTGCCAATACTGCGCCAAGACGTTTACGCGCAAGGAGCACATGGTCAATCATGTGCGCAAACACACGGGTGAGACGCCACATCGTTGCGATATTTGTAAGAAGTCCTTCACGCGCAAGGAACACTATGTTAACCACTACATGTGGCACACTGgtcaaacaccGCATCAGTGCGATGTCTGCGGCAAGAAATATACGCGCAAGGAGCACCTAGCCAACCATATGCGCTCCCACACAAACGAGACGCCGTTCCGTTGCGAGATCTGCGGCAAGAGCTTTAGCCGCAAGGAGCACTTTACCAATCACATACTCTGGCATACAGCAGGCGAGACGCCGCATCGGTGCGACTTCTGCTCCAAGACGTTTACGCGCAAGGAACATTTGTTAAATCACGTGCGACAGCACACTGGAGAGTCGCCGCATCGCTGCTCCTACTGCATGAAGACGTTCACACGCAAGGAGCATCTGGTGAATCATATACGCCAGCACACGGGTGAGACACCGTTCAAGTGCACGTACTGCACGAAAGCGTTCACACGCAAAGATCACATGGTTAATCATGTACGGCAACATACAGGCGAATCGCCGCACAAGTGCACATATTGCACGAAGACGTTCACGCGCAAGGAGCATCTAACGAATCATGTGCGACAGCACACGGGCGATTCGCCACATCGCTGTAGCTACTGCAAGAAGACCTTCACCCGCAAGGAGCATCTGACGAATCATGTGCGCCTGCATACGGGAGACTCGCCGCACAAATGCGAATACTGTCAGAAGACGTTCACGCGCAAGGAGCATCTCAATAATCATATGCGCCAGCACTCCAGCGACAATCCGCATTGTTGCAACGTGTGCAACAAGCCGTTCACACGCAAGGAGCATCTAATTAATCATATGTCACGCTGTCACACCGGTGATCGACCCTTTACCTGTGAGACATGCGGCAAATCCTTTCCCCTCAAGGGCAATCTGTTGTTCCATCAGCGTAGCCACACCAAGGGTCAGGAGTGCGAGCGTCCATTTAACTGCGAGAAATGTCCCAAGAATTTCATATGCAAAGGTCACTTGGTCTCGCACATGCGCTCCCATTCGGGTGAGAAGCCGCACGCGTGCACACTGTGCAGCAAGGCTTTCGTCGAACGCGGCAACTTGAAGCGCCACATGAAGATGAATCATCCGGATGCTATGATGCCGCCACCACCCGTGCATCCGCATCCCCAAATACCGGCTGGTGTCCTGACCCAAGTCAAGCAGGAAGTGAAACCGATCATAATTCCACATCACTCGGCGACGACCACGATGCACACCATCCAGCAGATAACAGCgggcgcagcagcagctggcgcCGGTGCCGTCCAGTTAGCGCCAGGATTGGTACCTCTGGTTACCAGTTCGCTAATCTCGCACAATGCCCAGTcccagaagcagcaacaggcggcagcagcagttgccgcCCAACAGcaggcggcagcagcagctgctgcccaACAGCAGGCAGCCGCAGCGGCAGCCGCACAACAGCAAgcagcggctgcagcagcagcagcagcacaccaacaacatcagcatcaggTTGCCGccgcacagcagcaacaacagcagcatcaacaggctgcagttgctgcacatcagcagcagcaacagcaattgcagcaacaacagttgctccAGCTGTCCATACAACAGGCCGCACATCATcaccaacagcatcagcagcagcagcagcaacaacagcaacaacaacagcagcagcagcagcaacaacatcatcaacagcagcaacagcaacaacaatcgcatTCACAGGCACcgacacagcagcagcaacagccgccaCCGCAGGTGCCGATTGCATTGATAAGTGATCCAAGTGCGTTGGCACGTGCCGccatgcaactgcaacatctGCCCACAAATGTTGAACAACATCCGGTGGTTTACTAA
Protein Sequence: MQHVSAASSAPSVVSAPVVTTGGGTTITLGGPPPPTQSLAISGSKHTSEHNHNHHHKEDGNKPPHHGIEMYKVNIEDISQLFTYHEVFGKIHGDVVNHVAAVHGSQLPPPQLPPPPPLPPQTTHSASAAAAAAAASQNNAAVAAVMASANAAAAAAAAASAAASAQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQPAISTNAGSQQGNATAVTTTSSSGAGSNNNSNNNGGSNNNSTTTTGELLMPKMEGGIHGVDGQSSVALAPDGTPIATGTHVCDICGKMFQFRYQLIVHRRYHSERKPFMCQVCGQGFTTSQDLTRHGKIHIGGPMFTCIVCFNVFANNTSLERHMKRHSTDKPFACTICQKTFARKEHLDNHFRSHTGETPFRCQYCAKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHYVNHYMWHTGQTPHQCDVCGKKYTRKEHLANHMRSHTNETPFRCEICGKSFSRKEHFTNHILWHTAGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCSYCMKTFTRKEHLVNHIRQHTGETPFKCTYCTKAFTRKDHMVNHVRQHTGESPHKCTYCTKTFTRKEHLTNHVRQHTGDSPHRCSYCKKTFTRKEHLTNHVRLHTGDSPHKCEYCQKTFTRKEHLNNHMRQHSSDNPHCCNVCNKPFTRKEHLINHMSRCHTGDRPFTCETCGKSFPLKGNLLFHQRSHTKGQECERPFNCEKCPKNFICKGHLVSHMRSHSGEKPHACTLCSKAFVERGNLKRHMKMNHPDAMMPPPPVHPHPQIPAGVLTQVKQEVKPIIIPHHSATTTMHTIQQITAGAAAAGAGAVQLAPGLVPLVTSSLISHNAQSQKQQQAAAAVAAQQQAAAAAAAQQQAAAAAAAQQQAAAAAAAAAHQQHQHQVAAAQQQQQQHQQAAVAAHQQQQQQLQQQQLLQLSIQQAAHHHQQHQQQQQQQQQQQQQQQQQQHHQQQQQQQQSHSQAPTQQQQQPPPQVPIALISDPSALARAAMQLQHLPTNVEQHPVVY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00560429;
90% Identity: iTF_00560429;
80% Identity: -