Scal009047.1
Basic Information
- Insect
- Scaptomyza caliginosa
- Gene Symbol
- -
- Assembly
- GCA_035044725.1
- Location
- JAWNNR010000510.1:281048-284221[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 6.9e-05 0.0045 17.3 4.9 1 23 171 194 171 194 0.96 2 16 0.0023 0.15 12.5 3.9 1 23 245 268 245 268 0.96 3 16 0.00061 0.039 14.3 3.3 1 23 333 356 333 356 0.96 4 16 0.006 0.39 11.1 0.6 2 23 408 429 407 429 0.96 5 16 8.9 5.8e+02 1.2 2.5 1 20 542 561 542 563 0.85 6 16 0.025 1.6 9.2 0.6 1 23 572 594 572 594 0.93 7 16 0.00044 0.029 14.7 3.0 1 23 601 623 601 624 0.96 8 16 0.00043 0.028 14.7 1.4 2 23 632 653 631 653 0.96 9 16 0.011 0.71 10.3 0.1 2 21 680 699 679 703 0.88 10 16 0.0064 0.41 11.1 0.9 1 23 738 761 738 761 0.96 11 16 1.1 69 4.1 1.4 1 22 768 789 768 789 0.96 12 16 0.0058 0.37 11.2 0.6 1 23 798 821 798 821 0.95 13 16 1.5e-05 0.001 19.3 0.5 1 23 840 863 840 863 0.97 14 16 0.093 6.1 7.4 0.2 1 23 873 895 873 895 0.94 15 16 2.4e-05 0.0015 18.7 3.3 1 23 901 923 901 923 0.99 16 16 5e-05 0.0032 17.7 0.9 1 23 929 951 929 951 0.98
Sequence Information
- Coding Sequence
- ATGGCAAGAACTTGTAGAGTCTGTGGTGGAGCAGATGGACGCTTTTGGATTGAGACACAAGTTGATAAATACGcgccaaaaacatttaaccAACTGGTACTGGAGCTAACAAAACTCGAGGTCGCTGTGGATCAAAATGAGAAGCTGCCGCCCTGGATTTGCCGCATATGTGTGCATAGATTGGAAAATGCCTACGAATTTGTACTTCAAGCACGCGAAACTTACAAGCTCTTGCTGCAAAAACTAGTGACGGAATCTCTATCGGAAGACACCGAAACGGGAACATTGAAGTGCTTGCGAGAGACGCCTATAGAATTGCTAGAAATAGAGGGTGTCACAATCAAAATGGAAGAgtcaacagaaacagcagtaCAACAATCAGATCCAACCAGCACAACAGACCCACTGATAAAGAAAAGCCGTTTGGATAATGCAAGACAGGATGATTCTGACTACGATGATGTGCCGCTCAAGCAGCGCCAAGtcgcaaataaaaaacgacCTATAATGCACCAATGCAACAAGTGCGATAAAGCCTTCAGATATGTAACAAATCTCTTTCGCCACAAGCGGCAAAATCACAGTCCAGAGCATGTGCGAAGTCCTGAGCACACCGGCGAGAATAAAACCAAGACTAATGATGTGAAACCAATTCATCGCAATATAGTTAAAAGCTCTATTACAGCACAAAGCAGCACGGCAGAtCAGGAAAGTGAATCAGGTGATAGCTACTACAAGTGCGATCAATGCGACAAATCCTACAAGTACATAATGCTGTTAatcaagcacaaacacaaatcgcATGTGTCCAGCCAGTGGCCAGCAGAGCTACGTCAAATTGGAAGCAATGGATCAAGTGCAGAACAGGCACCTAAGCAGGGATATTCGCGCCAGCGTTCAAAACCATCCAGCATAGATTCTCTGGTACACAGCATAATAAAAGAGATCAACTTGCCTGATGAGGATGATGCAAACAACTCGAGTACAGACAATTATTACAAGTGCGACCAGTGCGACAAGTCTTACAAGTACATTGTGAGTCTCatcaaacacaagcacaaggAGCACAAAGAGTTCAATGATACCGATGAGGAAGAGGACGAGAGAGCGCCTTTCAGATATGCGGCCGATGCATCTGTCATGTCTAAACCCTCACGCATTGACCGACGTGTCAAGGGATTTGATTTGCATCGCTGTAGACCGAATGGATCGAAGGAAATTCAATGCATGATCTGTTTACGAAGATTTATCAAACTACGACAGCTGCGAGAACATTTGAAGGCACATCCCAAAGACTTTACATTTGACGCTCACGGTGAGCCAATTGAACGCATTGCCGAAGGATTTTATAAGACAGCCGTAGAGTCAACGGTGTCTGGCCTAAAGCTCCGCATCTTTAACGATCTCAAAGTGGGCATGTTTGGACGTTATTACTCCATAACCAATGAGGCGCGTTACGAGATGAATCTGGACAGCTCGGACACAGACAGCGACGGCGAAGAGGATGTTGTGGAGCGAAACTCATACGCCTGCGAGCTGTGTGATTCCCCCAATGCTGTGTGGCCACGTAAATACCAGTTACACGAGCATCATCGACAGCAGCACACCTGGCTGGAGGCGCCGCACGTCTGTCAGCGCTGTGATTCACGTTTCCTGAGTGCTCAGTTGCTCGAGCATCATACACACAAACTGTGCCAAAACACTTTAAAGCGTTTTATGTGCGACAAGTGTCCTCAGCGCTTTTTCTGGCGACGGAATCTACGTGCTCATCTCGTGGATCACAAAAACAAGCAAGAGACATATTCATGTGATCAGTGCTCCCGCAGTTTTCAGGACAAAAGCGCTGTGACTAAGCACAAGCTTATGCATCATGATGTGAGCAATGAACTGCTACCTTGCCGCTGGTGTACACGTACTTTCTATCGCCCAGCACTGTTGCACAAGCATGTGCAGAGGCATGGCTTCAGCGGCGAGGATCTACCACTGGCAGAGACACTGCTGGCAGATGCTGCAAAGCCATCGGGAACTAAAACGATCGTCTGTAAGCTATGCGATATGCAGTTTGTTAGCATTGGCGATCTGCGGCGACACAACTCAATGCAGGCGCACAGTGATGAGGTAACAAACTATATGATAAGCACTGAGGAAGGCTTTGAGCTGCAGCTGGATGAAACGGATGAGAGTGATGAAGAAGCGACGAGTACGAGAACTTATCGATGCGATCTGTGTGAGATGAGCTTCTTGCGCAGACGCGACCTGAACGAACATCAGTACTCGTTGCACACCTTTGACAAGCTGCCATATTCCTGCAGTCATTGCATTTTCAAGACAGTTGATAAGGCCATGTTGGATCACCATCTGCGCACACAATGTCTAAACGAGGAGAAAAAATTCAAGTGCTCGCGTTGCGGCTACAAATTTATGTGGCTCGAAAATCTAGAGCAACACATGGGCAGTCAACATGCTAAATCTTCTAGTCAGTTGCCTGCGGTCACAAAGCGTAGCAGACGTTTTCGTTACCAGTGTCCTCACTGCTGGCGCTCGTTTGTGGTACAGCCTAGCTTGGACAAGCACATACGCGACATGCATGTAGCTAAAAAGAATCCCGGCAAAAAGTATCTCTGCTCGCTGTGTGGCCTGGAGTCGTTGACGCCCAACAAACTTAGTATACACATGCGGCGGCACAATGGCGAGAAGCCATTTAAATGTGATCTCTGCGATATGTCATTTACCGTACACTACGAGCTGAAGGTACACCGCCGCAAGCACACAGGCGAGCGGCCCTATCAGTGCACGTTTTGTGCCAAGGATTTCGCTAGGCCGGATAAATTAAGACGACATGTTTACATGCATAGCGTTAAgcgttaa
- Protein Sequence
- MARTCRVCGGADGRFWIETQVDKYAPKTFNQLVLELTKLEVAVDQNEKLPPWICRICVHRLENAYEFVLQARETYKLLLQKLVTESLSEDTETGTLKCLRETPIELLEIEGVTIKMEESTETAVQQSDPTSTTDPLIKKSRLDNARQDDSDYDDVPLKQRQVANKKRPIMHQCNKCDKAFRYVTNLFRHKRQNHSPEHVRSPEHTGENKTKTNDVKPIHRNIVKSSITAQSSTADQESESGDSYYKCDQCDKSYKYIMLLIKHKHKSHVSSQWPAELRQIGSNGSSAEQAPKQGYSRQRSKPSSIDSLVHSIIKEINLPDEDDANNSSTDNYYKCDQCDKSYKYIVSLIKHKHKEHKEFNDTDEEEDERAPFRYAADASVMSKPSRIDRRVKGFDLHRCRPNGSKEIQCMICLRRFIKLRQLREHLKAHPKDFTFDAHGEPIERIAEGFYKTAVESTVSGLKLRIFNDLKVGMFGRYYSITNEARYEMNLDSSDTDSDGEEDVVERNSYACELCDSPNAVWPRKYQLHEHHRQQHTWLEAPHVCQRCDSRFLSAQLLEHHTHKLCQNTLKRFMCDKCPQRFFWRRNLRAHLVDHKNKQETYSCDQCSRSFQDKSAVTKHKLMHHDVSNELLPCRWCTRTFYRPALLHKHVQRHGFSGEDLPLAETLLADAAKPSGTKTIVCKLCDMQFVSIGDLRRHNSMQAHSDEVTNYMISTEEGFELQLDETDESDEEATSTRTYRCDLCEMSFLRRRDLNEHQYSLHTFDKLPYSCSHCIFKTVDKAMLDHHLRTQCLNEEKKFKCSRCGYKFMWLENLEQHMGSQHAKSSSQLPAVTKRSRRFRYQCPHCWRSFVVQPSLDKHIRDMHVAKKNPGKKYLCSLCGLESLTPNKLSIHMRRHNGEKPFKCDLCDMSFTVHYELKVHRRKHTGERPYQCTFCAKDFARPDKLRRHVYMHSVKR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00567692;
- 90% Identity
- -
- 80% Identity
- -