Basic Information

Insect: Scaptomyza caliginosa
Gene Symbol: -
Assembly: GCA_035044725.1
Location: JAWNNR010000510.1:284496-289113[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 26 0.00064 0.042 14.2 1.9 1 23 227 249 227 249 0.97

2 26 0.11 7.2 7.2 2.2 1 23 255 277 255 277 0.95

3 26 0.02 1.3 9.5 0.1 2 23 309 330 308 330 0.96

4 26 0.012 0.76 10.2 2.7 1 23 404 427 404 427 0.94

5 26 0.1 6.7 7.3 0.7 2 22 439 459 438 459 0.96

6 26 1.3 83 3.8 0.9 1 20 468 487 468 489 0.91

7 26 0.13 8.8 6.9 1.6 2 23 503 524 502 524 0.97

8 26 0.017 1.1 9.7 0.3 1 23 597 620 597 620 0.95

9 26 0.002 0.13 12.7 0.1 1 22 629 650 629 650 0.96

10 26 0.0019 0.12 12.7 1.6 1 23 659 682 659 682 0.96

11 26 0.00015 0.0099 16.2 0.4 2 23 703 724 702 724 0.97

12 26 1.1e-05 0.00073 19.7 5.5 1 23 730 752 730 752 0.98

13 26 0.0037 0.24 11.8 3.8 1 23 902 925 902 925 0.96

14 26 0.02 1.3 9.5 3.4 1 22 932 953 932 953 0.95

15 26 0.029 1.9 9.0 0.7 1 23 962 985 962 985 0.94

16 26 6.9e-05 0.0045 17.3 1.9 1 23 1011 1033 1011 1033 0.97

17 26 2.4e-05 0.0016 18.7 3.0 1 23 1040 1062 1040 1062 0.98

18 26 0.019 1.2 9.6 0.0 2 20 1089 1107 1088 1109 0.93

19 26 0.0037 0.24 11.8 2.2 1 23 1154 1177 1154 1177 0.96

20 26 0.00055 0.036 14.4 2.0 1 23 1214 1237 1214 1237 0.97

21 26 0.012 0.8 10.2 3.0 1 23 1259 1282 1259 1282 0.97

22 26 1.3e-05 0.00084 19.5 0.1 2 23 1304 1325 1303 1325 0.95

23 26 4.4e-05 0.0029 17.9 2.9 1 23 1331 1353 1331 1353 0.99

24 26 4.8e-06 0.00031 20.9 1.9 1 23 1359 1381 1359 1381 0.97

25 26 5.5e-08 3.6e-06 27.0 2.4 1 23 1387 1409 1387 1409 0.99

26 26 0.0034 0.22 11.9 0.9 1 21 1415 1435 1415 1439 0.91

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	26	0.00064	0.042	14.2	1.9	1	23	227	249	227	249	0.97
2	26	0.11	7.2	7.2	2.2	1	23	255	277	255	277	0.95
3	26	0.02	1.3	9.5	0.1	2	23	309	330	308	330	0.96
4	26	0.012	0.76	10.2	2.7	1	23	404	427	404	427	0.94
5	26	0.1	6.7	7.3	0.7	2	22	439	459	438	459	0.96
6	26	1.3	83	3.8	0.9	1	20	468	487	468	489	0.91
7	26	0.13	8.8	6.9	1.6	2	23	503	524	502	524	0.97
8	26	0.017	1.1	9.7	0.3	1	23	597	620	597	620	0.95
9	26	0.002	0.13	12.7	0.1	1	22	629	650	629	650	0.96
10	26	0.0019	0.12	12.7	1.6	1	23	659	682	659	682	0.96
11	26	0.00015	0.0099	16.2	0.4	2	23	703	724	702	724	0.97
12	26	1.1e-05	0.00073	19.7	5.5	1	23	730	752	730	752	0.98
13	26	0.0037	0.24	11.8	3.8	1	23	902	925	902	925	0.96
14	26	0.02	1.3	9.5	3.4	1	22	932	953	932	953	0.95
15	26	0.029	1.9	9.0	0.7	1	23	962	985	962	985	0.94
16	26	6.9e-05	0.0045	17.3	1.9	1	23	1011	1033	1011	1033	0.97
17	26	2.4e-05	0.0016	18.7	3.0	1	23	1040	1062	1040	1062	0.98
18	26	0.019	1.2	9.6	0.0	2	20	1089	1107	1088	1109	0.93
19	26	0.0037	0.24	11.8	2.2	1	23	1154	1177	1154	1177	0.96
20	26	0.00055	0.036	14.4	2.0	1	23	1214	1237	1214	1237	0.97
21	26	0.012	0.8	10.2	3.0	1	23	1259	1282	1259	1282	0.97
22	26	1.3e-05	0.00084	19.5	0.1	2	23	1304	1325	1303	1325	0.95
23	26	4.4e-05	0.0029	17.9	2.9	1	23	1331	1353	1331	1353	0.99
24	26	4.8e-06	0.00031	20.9	1.9	1	23	1359	1381	1359	1381	0.97
25	26	5.5e-08	3.6e-06	27.0	2.4	1	23	1387	1409	1387	1409	0.99
26	26	0.0034	0.22	11.9	0.9	1	21	1415	1435	1415	1439	0.91

Sequence Information

Coding Sequence: ATGTTGCCGACAAACATTTGTCGCACATGTGCGCTACAGGATAATAACTTGATGGCGCTGTCTACGCGCAGTAAAAAGTACCCAGCGAAAAGTATTTCTGACATGTTGCTCAAACTAACACAAGCCGATCCCCTGTTGGAGCAATCTGATGATAATCTGCCGCGGCATCTGTGCAAACCATGTTTCACTCAGCTGGAAGCTGCCTATTCATTCTTGCTGCAGGCTCGCGAGGCTCAGGAgcgactgttgctgcagcttcgCAAAAGATTGCAGACAAAGTGTTTAGATGAAATACCCATTGACATTACGGTAGATCACATCAAAACTGAGGTGGAAATTGATCTAGATGCTGAAAACCACGCTGAGAGAAGTGAGCAATTAGAGGACGAAGATGCTGATATGGAGgaggaaaaggaaaaggagaTTGCCGCAGTGTACGTCACTTCCTTAAAGCGTCAGCTAACAAGTGATAGCGATAGCAGTACAGAAAAGGGCGATAAccaTGATATTGAATTTAAGCCCCCGCAGCTCCGGCGCAGTGCAAGGCGAGCCAAACCTAGCACAGATAGCGAAAATGATTTGAAgTCTAATTTAGAAAAGGACCAGCCAAGAGCTAAACGCGGTCGTGGGAGACCCACACGTCAAGGCAAATCAGAGACCATCAACGAGGATGGCCGTCACATGTGCAAAGTGTGTGGCAAGACGTATTCATGGTACCGAGATTTGCAACGCCATGAGCGAATACACTTCGAGCAGGCGGCCTTTGTGTGCGAGAGATGCGGCAAGAAATTCTTGCGCAAAGATAAGTACGTGTTCCATTTGCGATCGCACGAGAAACAAGCGGTGAAAGCGCAAGCGCTGCAGATGAGCAGTGAATGGCGCTACGCTGAGCGTCTCTACAGCTCGGGTCGTCTAAAGTGTGTGGAGTGCAAGCTGTGCGGATTGAAGTACCAGCGCATACAGGAGTTGCGTGAGCATTTGGCAATTCATGTAAACATTGAGACATTGTCCAATCTCAGTTTAGACAACGATGTCATACGAGAGCAGTTTGGCAGCGAATGGGATGTACAACGGATCAAGCAACAGGTATGCGAGCAAATTGCTAAAGGGCGCGACCAGCTGGACAATTTTTGTGCTATTGTAAACTCATACGGCTATGAGCTGTGCCTAAGTGATTCTGATGAGGAGTTGCCGGATAAGTCAACACAATATCAATGCCAGCCTTGCAGTACCACCTTTACACGCAAACATCGCCTCATAAGACACACATTGGAGGAGCACACGCAAACGAATGAAACCGAAGCGCCTTGGGTGCGCTGcaatatttgccaaattggttttgtttgcaacaaaCTCCTAGAGCAACATCAGCGCACACAGTGCTTCAATCCGCTAAAGCGTTACAGCTGCGAACATTGTCCTGGCAAATTCATTTGGCTACAGAATCTACAGCAGCATGCTTGTAGCAGACTGCAATCGTATGAACAAAAGGATCATCGCAAAATTCAGTGCTGTCTGTGTGATACCAAACTAAACAGCATGAGTGCTATGCGCTCTCATTTGCTTACGCATCGCGATGGGTACACAGGCATCGATCCACAGCAGCAGGCCGCCTACTTTCACACTTTTCAAGATGATATTGATTGCAGTCTTTCAGAACTTGGTACACATATAGCAGGCgattttaaaacacaaaatgtagGACGCTACTTTAATGCCTGTACGGACAGCGGACAGGAATTGGAGTTCAATGATTCTGACAGTGCTTTAACCGATGCACCCAGTCTGCACAGCTGTGCCGTGTGCGGTGAGAGCACGGAACTTCTCGTCCAGTTGCAAAAACATCAAGAAAGTCAACACAAAGAGTTAGACCAAAGGTTGCCTTATACCTGCACTGATTGTGGCTTGGGTTTTGTAGCAGAGACACTGCTTCAGCAACATCGTCGTCGTATCTGCgccaagcagcaagcaaagtATAATTGCCCGGAATGTAGTCAACGCTTTTACTGGCTGTCTAACTATAAACGACACATGCAGCTGAAGCATAATGTTGAGCATACGGACGAGACTCAGATTCGGAAAGACAACAGGCCAACATCAAAATTGCAGTGCACCGAATGCGAAAAGGTATTTGTTTGGCCCAAGGATCTGACGCGTCACAAGCGCATGCATCAGTCAGAGGTGCAGTTTGAATGTACTTTTTGTGAGCGCAAGTTTCATCGTAAGGATAACCTCAAGTCGCACATGAGAATGCATAGGGAGCAACAGTTAGATGCGTCAACTGTGTCAGTCAGTGAGCAACAGGACACGTTGCAGCAGCGCTGGAAGTTGTTACCAAGCCACCTGTGTCGTCCCAATGGCTGCAAGCAGATTCAGTGCATGATTTGCCTATCTCAGCATACAAAGATCTCCGATTTGCGAACGCATTTAAGTAGTCATCAGTTGGCACTTAAGTTTTCCGGTGAACGTGGCCAACCTGAAAGCATATCTAGCATTTCTCGTGCTCTGTATCCCGAGTTAAGCACGTCTTTGGATAAGCAAGGCTTAACTAACCGCATACAAAGTGATCTAGCCAATGGTTTGGAACTGGAGAGATTTATTTCGATTACCAACGAGGCGGGCATTGAGTTAAGTTTAGATAGCAGCGAAACAGATACGGATTCGGATTCAACAGACAACCAACGAAACAGCAGTGATCGCTTGTACACATGTGAGCTGTGTCAGATTTGTGTGACTCGTAAGCATCAGCTCTATGCCCACCAGCAAGAGCAGCATACTTGGGAGGAGGCGACGCACATTTGCAGTCATTGCCAGGCAAGATTTGTTAATGAACAGCTACTGGAGCACCATCATCGCACCGTCTGCCGAAATGGCCAGCGTCGTTTCCTTTGTCGCAAGTGCCCGTTACGCTTTCGTTGGCGAGACAATCTTAAGCTACACACAAACGTAGCGCACCAGGAGGGGAGTGTGCAAGATAAAGCCAGCTTGGATATTCAGCAAAATGGCTCACTTATGCTGCCAGCGGTTAGCTACGACTGTCTGGAGTGCAAGCGTAgcttcaaaatgcaaaaggatCTCACAAGGCACACCCTTATGCATACTCAGGAGTCAAGCATCTATCGTTGTCATTGGTGCGCACGTCGCTTCTATCGCCAATCAAACCTGCTGCAGCACATTGAGCGTCATGGCATCAGCGCTGATCAGCTGCCCTATGCGGAGGCCTTGCTCAATGCCAGTCGCCATCCGCATGGTAGGAAATGCATTCAGTGTAAGGTGTGCGAAATAACCTTTGCCAGCATTGCGGCACTGCGTTCCCATTTGACATCTGCACCAGCTGGGACGCATCATGCAATTGAATCTATGCTTAACTATTCCATTACTGATCAGCTGGGCTATGAACTGCACTTGGACGACTCGGAAACAGATGAGGAGGCCAAGCCGGAGGGCACGCCGGCGCATTACACATGTGGCATGTGCCAGCTGCGTTGTGTGCGCAAATTTgagctgcaacagcatcagcaggcCATGCATCGTCTAGAGCGGATAAGCCAAGGATGCGAGCTGTGCATCTATAAGAGCGTCTCTCCGGATCTGATTGCCTATCACCGGCGTGTACTGTGCGATAATACGGAAAAGCAGTTCAAGTGTTCAAAATGTAATTATCGTTTTATGTGGCAATCGAATCTTGAGCAGCACATGCAGCTACAGCATCCCAGCAGCGCGGAGACGACTTTAATGCCTATTTCAGACAGTGTCAATTCTGAAAGCCAAATCTTTCAATGTGGTCAGTGTCCCAGTAAATACAATCGCAAGGATCGCTTGACGGCGCATGTGAAACGATGTCATATAGATGGTGCAACAGGCACTAAAAAGTTGCCTGCGACACcagccaagcaacaaaagagtTTCTTGTGCGCTTTCTGTGGCAAAGCTGTTAGCTCCTCATCCAATTTAATCATACACATACGTCGACACACGGGTGAGAAGCCCTTTAAGTGCGATTATTGTGACATGGCCTTTCCACGTTCCTCCGATCTCCAATGCCACAGACGCACCCACACTGGGGAGCGGCCTCACGTTTGCACCGTCTGCCAGAGGGGTTTCGCTCGCTCATacaagctgcagcagcacatGCGCATTCACAATGGTGAGCGTCCCTACAAGTGCACCTACTGCGACAAGAGCTTCACCCAGTCCAATGATCTAACGCTTCACATTCGACGACATACGGGCGAACGTCCCTATCACTGCAACACGTGCGGAGAGAGATTCATTCAGGGCACGGCTTTGAAAAATCATCGACTGCAGAGTGGTCACATCGAAACGGAAGTCCAACAAGTAAAAGATGACtga
Protein Sequence: MLPTNICRTCALQDNNLMALSTRSKKYPAKSISDMLLKLTQADPLLEQSDDNLPRHLCKPCFTQLEAAYSFLLQAREAQERLLLQLRKRLQTKCLDEIPIDITVDHIKTEVEIDLDAENHAERSEQLEDEDADMEEEKEKEIAAVYVTSLKRQLTSDSDSSTEKGDNHDIEFKPPQLRRSARRAKPSTDSENDLKSNLEKDQPRAKRGRGRPTRQGKSETINEDGRHMCKVCGKTYSWYRDLQRHERIHFEQAAFVCERCGKKFLRKDKYVFHLRSHEKQAVKAQALQMSSEWRYAERLYSSGRLKCVECKLCGLKYQRIQELREHLAIHVNIETLSNLSLDNDVIREQFGSEWDVQRIKQQVCEQIAKGRDQLDNFCAIVNSYGYELCLSDSDEELPDKSTQYQCQPCSTTFTRKHRLIRHTLEEHTQTNETEAPWVRCNICQIGFVCNKLLEQHQRTQCFNPLKRYSCEHCPGKFIWLQNLQQHACSRLQSYEQKDHRKIQCCLCDTKLNSMSAMRSHLLTHRDGYTGIDPQQQAAYFHTFQDDIDCSLSELGTHIAGDFKTQNVGRYFNACTDSGQELEFNDSDSALTDAPSLHSCAVCGESTELLVQLQKHQESQHKELDQRLPYTCTDCGLGFVAETLLQQHRRRICAKQQAKYNCPECSQRFYWLSNYKRHMQLKHNVEHTDETQIRKDNRPTSKLQCTECEKVFVWPKDLTRHKRMHQSEVQFECTFCERKFHRKDNLKSHMRMHREQQLDASTVSVSEQQDTLQQRWKLLPSHLCRPNGCKQIQCMICLSQHTKISDLRTHLSSHQLALKFSGERGQPESISSISRALYPELSTSLDKQGLTNRIQSDLANGLELERFISITNEAGIELSLDSSETDTDSDSTDNQRNSSDRLYTCELCQICVTRKHQLYAHQQEQHTWEEATHICSHCQARFVNEQLLEHHHRTVCRNGQRRFLCRKCPLRFRWRDNLKLHTNVAHQEGSVQDKASLDIQQNGSLMLPAVSYDCLECKRSFKMQKDLTRHTLMHTQESSIYRCHWCARRFYRQSNLLQHIERHGISADQLPYAEALLNASRHPHGRKCIQCKVCEITFASIAALRSHLTSAPAGTHHAIESMLNYSITDQLGYELHLDDSETDEEAKPEGTPAHYTCGMCQLRCVRKFELQQHQQAMHRLERISQGCELCIYKSVSPDLIAYHRRVLCDNTEKQFKCSKCNYRFMWQSNLEQHMQLQHPSSAETTLMPISDSVNSESQIFQCGQCPSKYNRKDRLTAHVKRCHIDGATGTKKLPATPAKQQKSFLCAFCGKAVSSSSNLIIHIRRHTGEKPFKCDYCDMAFPRSSDLQCHRRTHTGERPHVCTVCQRGFARSYKLQQHMRIHNGERPYKCTYCDKSFTQSNDLTLHIRRHTGERPYHCNTCGERFIQGTALKNHRLQSGHIETEVQQVKDD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01323519;
90% Identity: -
80% Identity: -