Scal002672.2
Basic Information
- Insect
- Scaptomyza caliginosa
- Gene Symbol
- ftz-f1
- Assembly
- GCA_035044725.1
- Location
- JAWNNR010000144.1:60648-72728[+]
Transcription Factor Domain
- TF Family
- SF-like
- Domain
- zf-C4|SF-like
- PFAM
- AnimalTFDB
- TF Group
- Zinc-Coordinating Group
- Description
- The ligand binding domain of nuclear receptor steroidogenic factor 1 (SF-1): SF-1, a member of the nuclear hormone receptor superfamily, is an essential regulator of endocrine development and function and is considered a master regulator of reproduction. Most nuclear receptors function as homodimer or heterodimers, however SF-1 binds to its target genes as a monomer, recognizing the variations of the DNA sequence motif, T/CCA AGGTCA. SF-1 functions cooperatively with other transcription factors to modulate gene expression. Phospholipids have been determined as potential ligands of SF-1. Like other members of the nuclear receptor (NR) superfamily of ligand-activated transcription factors, SF-1 has a central well conserved DNA binding domain (DBD), a variable N-terminal domain, a flexible hinge and a C-terminal ligand binding domain (LBD). [1, 8, 3, 11, 6, 5, 12, 10, 9, 2, 4, 7]
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 3 1.6e+04 -9.9 27.3 42 160 25 150 4 191 0.40 2 3 7.7e-20 4.2e-16 59.2 0.2 1 81 323 402 323 445 0.75 3 3 2.9e-72 1.6e-68 231.9 1.3 157 408 523 767 486 769 0.90
Sequence Information
- Coding Sequence
- ATGTTATTAGAAATGGATCAACAACAGGCGACTGTACAGTTTATATCGTCGCTGAATTTGTCGCCGTTTAGCATGCAGctcgagcaacagcagcctgCTAGTCCAGCGCACAGCAACACTaacgctaacaacaacaacaacaacaacaacaacaacagcagcagcaataacaataacaataacaataacaacaacaacaacgataacgaTACAAGTGCGTTAAGCAATTCCGATAACGATTACAGCGCCTATACGCTGCAATTGGGcaatcatcaacagcaacagcagcagcaacagcaacaacaacagcaacaacatcatacACATAaccctcaacaacaacattacccacagcaacaacagaatattgccaacaacaatgcgaacCAATTCAATGCTTCCTCATATtcgtatatatacaatttcgATTCACAGTACATATTTCCGACAGGCTATCAGGAAACGAACTCATCTCATTCGCAACAAAGCGCAAGTGGAGCCGGCAACACAACAGCTGGCAACTCCACCCAGCTCCTaaacagtggcagcagctcaTCAGGTAATGGCTACATGTTGCTGCCACCTGGCTCCGGTGGCAACTCGTCTGTGGCAGCAGCTCACATCTCCGGCAATGCAGGCGGTAATGCTGTCGCAGGCGTTGCTGGAAcggctgctggtgctggtggtcAACATGGCGGCACCTCCGCCAGTTCCGGCGGCGGTGAAGCCATAGATTTTAAGCATCTGTTCGAGGAACTGTGCCCCGTTTGCGGAGATAAAGTCAGCGGCTATCATTACGGTCTGCTCACCTGCGAATCCTGTAAAGGTTTTTTTAAGCGTACcgttcaaaacaaaaaggtcTACACTTGCGTGGCGGAGCGCTCCTGCCACATTGATAAGACGCAGCGCAAACGGTGTCCATATTGTCGATTCCAAAAGTGTCTGGAAGTGGGCATGAAACTAGAAGCGGTTCGTGCGGATCGCATGCGCGGTGGGCGCAATAAGTTTGGACCCATGTATAAAAGAGATCGGGCGCGAAAGCTGCAAGTGATGCGTCAGCGACAACTAGCGCTCCAGGCGCTTCGCAGTTCGATGGGCACAGACATAAAACCGACGCCACTCTCGCCGGGCTATCAGCAATCATATccaaatatgaatattaagCAAGAAATTCAAATACCTCAGgtATCCTCACTCACTCAATCGCCAGACTCATCGCCCAGCCCCATCGCTATTGCCTTAGGTCAGGTTAATGCAAATGTGATAGCCACGCCGATGAGTACGGGCAGTTTaagtggcaatggcaatggtagCTCCTTACTGGGCAATGTCAATAACAACCCTAATAACAACGTTACCAACGGTTCAGGCATAGGAAGCGGCGGTGGTCGCGGTGAAGAAAGCGCCAGTGCCGGCGGTGGCAGCGTCAGCAACAACGTCGGCGATGGCCTGCAACGCAGcggaaacagcagcaatagtaacagcagcagctgccatgaAATCGGCACTGGATCTCTACAGAACACAGTCGAATCGAAATTGTGttttgattCTGGCACACATCCATCGAGCACAGCTGACGCGCTTATTGAGCCACTGAGGGTCTCACCCATGATACGAGAGTTTGTGCAATCTATTGATGATCGGGAATGGCAAACTCAACTCTTTGCGCTGCTGCAGAAACAGACGTACAATCAGGTTGAAGTGGATCTCTTTGAGTTGATGTGCAAAGTGCTCGATCAAAATCTATTTTCACAAGTAGATTGGGCAAGAAACACCGTTTTCTTTAAGGATTTAAAGGTGGATGATCAGATGAAATTGCTTCAGCATTCATGGTCCGACATGCTGGTGCTGGATCATCTACACCATCGCATTCACAACGGTCTGCCCGATGAGACACAACTGAATAATGGTcaggtttttaatttaatgagtCTTGGGCTACTAGGCGTGCCACAACTGGGCGACTACTTTAACGAATTGCAGAACAAGCTGCAGGAACTAAAGTTCGATATGGGAGACTATGTGTGCATGAAGTTTTTAATACTACTTAATCCAGACGTGCGTGGAATTGTGAATAAGAAAACCGTTTTGGAGGGACATGAAAATGTGCAGGCCGCGCTACTCGATTACACATTAACATGTTATCCTTCAGTTAATGACAAATTCAGGAGGTTACTGAATATCCTTCCAGAAATTCACGCAATGGCCGCAAGGGGAGAGGAACATCTGTACTCTAAGCATTGTGCTGGCAGCGCCCCTACGCAGACCCTGCTTATGGAAATGCTGCATGCGAAACGAAAAGTCTAA
- Protein Sequence
- MLLEMDQQQATVQFISSLNLSPFSMQLEQQQPASPAHSNTNANNNNNNNNNNSSSNNNNNNNNNNNNDNDTSALSNSDNDYSAYTLQLGNHQQQQQQQQQQQQQQHHTHNPQQQHYPQQQQNIANNNANQFNASSYSYIYNFDSQYIFPTGYQETNSSHSQQSASGAGNTTAGNSTQLLNSGSSSSGNGYMLLPPGSGGNSSVAAAHISGNAGGNAVAGVAGTAAGAGGQHGGTSASSGGGEAIDFKHLFEELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNKKVYTCVAERSCHIDKTQRKRCPYCRFQKCLEVGMKLEAVRADRMRGGRNKFGPMYKRDRARKLQVMRQRQLALQALRSSMGTDIKPTPLSPGYQQSYPNMNIKQEIQIPQVSSLTQSPDSSPSPIAIALGQVNANVIATPMSTGSLSGNGNGSSLLGNVNNNPNNNVTNGSGIGSGGGRGEESASAGGGSVSNNVGDGLQRSGNSSNSNSSSCHEIGTGSLQNTVESKLCFDSGTHPSSTADALIEPLRVSPMIREFVQSIDDREWQTQLFALLQKQTYNQVEVDLFELMCKVLDQNLFSQVDWARNTVFFKDLKVDDQMKLLQHSWSDMLVLDHLHHRIHNGLPDETQLNNGQVFNLMSLGLLGVPQLGDYFNELQNKLQELKFDMGDYVCMKFLILLNPDVRGIVNKKTVLEGHENVQAALLDYTLTCYPSVNDKFRRLLNILPEIHAMAARGEEHLYSKHCAGSAPTQTLLMEMLHAKRKV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01323444;
- 90% Identity
- iTF_01323444;
- 80% Identity
- iTF_01320520;