Sleb012445.1
Basic Information
- Gene Symbol
- Trl_2
- Assembly
- GCA_003285725.2
- Location
- NW:11829377-11840706[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.1e-43 4.1e-39 132.1 6.1 1 54 318 371 318 371 0.99 2 2 0.55 7.2e+03 -3.2 0.7 4 17 372 385 372 390 0.78
Sequence Information
- Coding Sequence
- ATGTCGTTGCCAATGAATTCGCTGTACTCGCTCACTTGGGGCGATTACGGCACCTCTCTGGTATCGGCCATACAATTGTTGCGGTGTCATGGCGACCTGGTCGATTGCACACTGGCAGCGGGTGGACGCAGTTTTCCTGCCCACAAAATTGTATTGTGTGCCGCTTCACCGTTTCTTCTCGATTTGCTAAAGAACACACCATGCAAACATCCGGTGGTCATGTTGGCCGGCGTCAATGCCAACGATTTGGAGGCATTGCTTGAGTTCGTCTATCGGGGGGAGGTGAGCGTCGATCATGCGCAGTTGCCCTCACTGTTGCAGGCAGCTCAATGCCTTAATATCCAAGGCCTGGCACCCCAAACAGTGACAAAGGACGACTACACGACCCATTCGATACAACTGCAGCACATGATACCACAGCACCATGACCAGGACCAACTAATTGCGACAATTGCCGCGGCTCCCCAGCAAACTGTGCACGCACAGGTTGTTGAGGATATACACCACACCGGACAGATACTACAGGCCACACAGTCAAATGCAGGACAACAGGCAGCCACCGTGACTCTCGATACCAGCAAACATGATCAGGCAGTTATTCAGGCCTTCTTACCCGCACGCAAACGAAAGCCGCGCGGCAAGAAAATGTCACCGACCGCATCGAAAATCAGCAAAGTTGACGGCATGGACACGATTATGGGAACACCGACCTCTTCACACGCAGCAGCCCAGCAGGTGGTTCAACAGCAAGTGCTAAGCGAAAACGGCGCCGAAACCCAACTGATCACCTCCACGCCGATCATCAAGAGCGAAGTGCAAAAAGTTGAGACAATTGTGACCATGGATCCGAACAATATGATACCGGTAACGTCGGCAAATGCGGCAACAGGCGAAATACAAACGTCCAGCGGCACGACAGGCACACCAAGCGGCAGCGGAGCCTCTGCAACGCCCAAATCCAAACGAACCAAACATCCGCCTGGCACAGAGAAACCTCGATCACGGTCACAATCGGAACAACCCGCTACTTGCCCCATTTGTTATGCTGTCATCCGTCAATCCCGCAACTTGCGTCGCCATCTGGAGCTGCGGCACTTTGCCAAACCGGGCGTCAAAAAGGATAAGAAAATACCCGGCGGAAAGAAACCCGGAGGCAGTTCAGGCCCAGGCAGCGGTCAGTCGGTGGGCAACAATCAAACCATAAGCAGCAGCTCAGTCAGCTCGGTGCCGCAGGTGCAGTCTGTGCAATCGTTGCACACGTTGCAGGGTGTGCAAGTCAAGAAGGATCCCGatgcgcaacaacaacagcagcagcaacagcagcaacaacagcaacagccgcaacaAACAATGACAGTGACCACAACAACGGCCGGCGGGCAagttcaacaacaacaggtgcAGCAAGTGCaggtgcagcagcagcagcagctgcaacaccACCAGATTATCGATCAGTCGGGCAACATAACCACCGCTACGACCAGTGCGCAGGCGGCGGCtcagcagcaggcagcagcggGACAGCAGTTGGTCGCGCAGGCCGATGGCACCGATAGCAACACATCCTTATCGATAGCTCAGGTGCAGACGCTGCAGGGTCATCAGATCATAGGCAATTTAAATCAGGTGAATATTACtgattttcaacaacaacaacaacagcagcagcaacaacaacaacaacaacagcagcagcaacaacaacaaacacaaccaCAACAGACGCTCTGA
- Protein Sequence
- MSLPMNSLYSLTWGDYGTSLVSAIQLLRCHGDLVDCTLAAGGRSFPAHKIVLCAASPFLLDLLKNTPCKHPVVMLAGVNANDLEALLEFVYRGEVSVDHAQLPSLLQAAQCLNIQGLAPQTVTKDDYTTHSIQLQHMIPQHHDQDQLIATIAAAPQQTVHAQVVEDIHHTGQILQATQSNAGQQAATVTLDTSKHDQAVIQAFLPARKRKPRGKKMSPTASKISKVDGMDTIMGTPTSSHAAAQQVVQQQVLSENGAETQLITSTPIIKSEVQKVETIVTMDPNNMIPVTSANAATGEIQTSSGTTGTPSGSGASATPKSKRTKHPPGTEKPRSRSQSEQPATCPICYAVIRQSRNLRRHLELRHFAKPGVKKDKKIPGGKKPGGSSGPGSGQSVGNNQTISSSSVSSVPQVQSVQSLHTLQGVQVKKDPDAQQQQQQQQQQQQQQPQQTMTVTTTTAGGQVQQQQVQQVQVQQQQQLQHHQIIDQSGNITTATTSAQAAAQQQAAAGQQLVAQADGTDSNTSLSIAQVQTLQGHQIIGNLNQVNITDFQQQQQQQQQQQQQQQQQQQQQTQPQQTL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00338486;
- 90% Identity
- iTF_01319842;
- 80% Identity
- iTF_01319842;